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… Yeah, so any metabolite, produced by bacterial or fungal metabolism by microbes, will have a functional role. … I think the important thing to remember is that, thanks to genomics, we now know that it is very hard to find stuff … in many cases we are lacking a lot of mycological information. It could be a very unstable interaction, mediated …

… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, Biodesign and pathway engineering Mass spectrometry based metabolomics Below is a … to determine coverage of variants depends on project Fungal Minimal Draft Lower coverage short-read whole genome …

… Celebrating 25 years of genomics research 2022 marked the JGI’s 25th … to advancing the frontiers of environmental and energy genomics. The two-story mural at the Integrative Genomics …

… bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to identify … Exploring the fascinating world of giant viruses, which challenge …

… The CSP Functional Genomics call is to enable users to perform state-of-the-art … genomics research and to help them translate genomic information into biological function.  The emphasis is on … the applicant.  Learn about the general review process or find details on the internal synthetic biology review process …

… Leveraging massive comparative genomics to decode millions of … fungi remain largely mysterious. Only about 200,000 fungal species have been named. Among those sequenced, … Department of Energy (DOE) Joint Genome Institute (JGI)’s Fungal and Algal Science Program and JGI users have been at …

… they had actually devised a standard called the “ Minimum Information of Any Sequence” (MIxS) standard a number of years … of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial genomes. And … are protecting the plants against pathogens. So usually fungal or oomycete pathogens. In this case they worked on a …

… Facility, the JGI serves more than 2,500 users that predominately come from the public sector: academic and government institutions — with capabilities that had remained largely … AI-ready large-scale data repositories for genome information with analysis tools for mining and prediction The …

… submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific details including project types supported, sample/capacity limits, … The CSP and FICUS calls are open to both domestic and international applicants from any institution type and at …

… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work encompasses … viruses and mobile genetic elements. Beyond exploring and characterizing microbial diversity, work in the … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and …

… four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between … fungal metatranscriptome yet,” said Igor Grigoriev, Fungal Genomics Program Head at the JGI.  Along with an improved … These tools give researchers a way to access much more information about fungi in these environments. “Now with these …

… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, … enabled to log in. Check our Help Site for additional information, including a Login Walkthrough and FAQ . …