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Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species
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Partners
… science and serve as impact multipliers . The JGI has a long-term partnership with the HudsonAlpha Institute for Biotechnology for our Plant Program, … DOE Systems Biology Knowledgebase (KBase) and the National Microbiome Data Collaborative (NMDC)—to provide access to …
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Natural Prodcast Episode 8: Eric Schmidt
… Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there and welcome back for … rich and underappreciated. And we’ve worked both with the microbiome. So, with symbiotic bacteria that live in animals … now, it’s still a hard problem that’s not solved. So we’re focusing on the other avenue. DAN:  So, speaking of …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper … and agriculture. Understanding the compositions of river microbiomes—who the core microbes are and what they do—can … (DOE) Office of Science, Office of Biological and Environmental Research (BER) grants DE-SC0023084, DE-SC0021350, …
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De novo transcriptome assembly of drought tolerant CAM plants, Agave deserti and Agave tequilana
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Natural Prodcast Episode 11: Marnix Medema
… about natural products and the science and scientists of secondary metabolism. Hey there, and welcome back to Natural Prodcast, and this will be episode 11. This continues our little sprint on genome mining. In the last … we, for example, are really interested in metagenomes and microbiomes and figuring out which gene clusters are …
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DNA Synthesis Program
… of biofuels, biochemicals and other bioenergy solutions.  The program has been a pioneering effort in functional genomics since 2012, with a focus on addressing … plays a central role in advancing functional genomics, focusing on developing genetic systems that can address …
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Focus: Synergistetes
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Cupriavidus agavae sp. nov., a species isolated from Agave L. rhizosphere in northeast Mexico.
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from candidate phyla, major branches … widening since 2005. This gap is also reflected in the strongly biased representation of sequenced genomes in the …
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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse … biogeochemical cycling and inter-organismal interactions. These insights are crucial for addressing key … The Microbial Program focuses on using advanced sequencing technologies to explore …
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An Integrated Dataset to Understand Ecosystem Interaction
… tree and soil dataset for understanding the dynamic relationship between poplar trees and their microbial partners. … they are, a recent data set  outlined in  Scientific Data connects molecular features to large ecosystem-level … wildlife habitats and water-quality regulation. Focusing on the rhizosphere and interactions between the …
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