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The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, DNA synthesis … product audit to analyze the scientific value, demand, and costs of current offerings in the JGI product catalog. As a … annotation based on chemical standards or computational approaches. Relative abundance of identified metabolites and …

… other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … of “big data,” and artificial Intelligent/machine learning approaches in data analysis and interpretation is creating … (Nature 2019). Other projects in the group include the sequencing and comparative analysis of thousands of archaeal …

… those to try and increase titer and rate and drive down the cost of producing riboflavin at scale.  DAN: Got it.  NIGEL … NIGEL MOUNCEY: Oh, sure. I think our legacy obviously is in sequencing.  DAN: Of course.  NIGEL MOUNCEY: Sequencing the … functional genomics. And there’s a lot of sequencing based approaches, of course, now that we can use to figure that …

For accepted proposals, sequencing, synthesis, metabolomics and analysis will be … the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.   Proposal Call … with DOE mission-relevant projects that call for expansive sequencing, synthetic biology and metabolomics capabilities …

… an unlimited number of proposals).  For accepted proposals, sequencing, synthesis, metabolomics and analysis will be … the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. … All proposals …

… of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … material is one of the greatest predictors of a successful sequencing project. It is imperative that users properly … nucleic acid quantification in our Illumina and PacBio sequencing workflows and provide guidance as to how to …

… plan is written into a Statement of Work document. … For sequencing projects, once work is under way, raw sequence … in publication of results. … Submission … More on Sequencing Projects …

FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours …     Q4 2025 175     2,167     *Includes Illumina and PacBio sequencing platforms. **Operating Hours target is based on … datasets. [Download PDF] Q3 – Report on new computational approaches for the annotation of genomic data. [Download …

… any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required by … for Federal Agencies , DNA Synthesis Appendix  and DNA Sequencing Appendix are available for download.)  After your …

I think. DAN UDWARY: Yeah, and that was a JGI Community Sequencing Project. You’re right, yeah. NADINE ZIEMERT: Yes. … UDWARY: I think that was one of the JGI’s early moves into sequencing things for the purpose of looking at the … soil. But we also have, in collaboration with other people, lake sediments. We have microbiomes from different …

… microbial communities using a variety of cutting-edge approaches.  Our group also seeks out new approaches that utilize microfluidics/microdroplet … that allow us to select specific uncultivated microbes for sequencing based on their level of metabolic activity …

… gene annotation and protein folding models, to improve the accuracy of functional predictions and speed up genome …