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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and tools in support of DOE mission priorities. Data … and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. …
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DNA Synthesis Program
… The DNA Synthesis Program aims to generate large datasets to explore sequence-function relationships, … innovative screening technologies and computational tools that enhance biofuel production and biosystem design. … and pathways vital to DOE missions. Using bioinformatics tools and genome portals, we study lignocellulose …
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Metagenome Program
… Program combines large-scale, time-series metagenomic data with detailed characterization of model systems to … evolution. The Program focuses on developing computational tools and visualization resources that support user analysis … and metatranscriptomics, to metagenomics and metabolomics data, shedding light on microbial metabolism and activity in …
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Natural Prodcast Episode 9: Roger Linington
… or NPAtlas, a freely accessible natural products structure database, which is going to be just invaluable to the … we’re now very much – we’re interested in how we can build tools which will let us see the whole landscape of natural … and new developments in mass spectrometry hardware, software, new developments in NMR methods, ultra fast …
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Industry Engagement Program
… ensure U.S. energy dominance by integrating supercomputers, datasets and AI agents to solve key national challenges. The … high-value partnerships among members that catalyze data flows and promote novel data applications. As a … data repositories for genome information with analysis tools for mining and prediction The JGI works in partnership …
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Plant Program
… understanding of plant diversity and integrating various data types to explore the molecular mechanisms behind phenotypic evolution. It also utilizes advanced tools, including deep learning algorithms for gene … health. By integrating cutting-edge technologies and data-driven methods, the program equips researchers …
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Fungal & Algal Program
… fungal and algal pangenomes, and integrate multi-omics tools to enhance functional studies. These efforts seek to … sampling of fungi, laboratory analysis and genomics data exploration. … The Mycocosm web portal provides data access, visualization, and analysis tools for …
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Natural Prodcast Episode 11: Marnix Medema
… center and a lot of the really important recent events in data analysis and secondary metabolism over the last decade or so. He’s involved with a lot of the common tools that genome miners use, including antiSMASH, MIBiG, … of biosynthetic gene clusters. So it’s actually a software tool and it takes as input – it takes genome …
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Microbial Program
… The program provides high-quality, large-scale genomic data to advance microbial research that drives sustainable … The program aims to generate high-quality genomic datasets, particularly for uncultivated microorganisms, by … microbial lifestyles using AI-driven analysis of such datasets. The program also collaborates with isolate …
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Natural Prodcast Episode 15: Katherine Duncan
… the idea of taking all the different natural products data that there is and putting things, coalescing them, so … basic questions that we can only really address with bigger data sets and integrated data sets. So yeah, in terms of, I … that I’ve appreciated since starting my own group is these tools, in terms of looking at the chemistry produced by …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Neighbor (KNN) Classification. LDA is a supervised data compression technique that was used to take the complex, high-dimensional data (the 136 tetranucleotide frequencies for each of the … Metagenome Stability Diagram in IMG/M Data portal …
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Plant Microbial Interactions Group
… by microbial partners. We use a variety of genomics-powered tools to study this complexity, including single-cell and … characterization methods, in addition to bioinformatics tools to elucidate phage function in this tripartite … atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled the association between the …
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