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User Support
… science. DOE JGI Project Managers collaborate with users to develop project requirements, define the scope of … Project Manager will facilitate project execution by: Metadata verification and coordination with IMG , GOLD and others for data annotation and submission Tracking, monitoring and …
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DNA Synthesis Program
The DNA Synthesis Program aims to generate large datasets to explore sequence-function relationships, … innovative screening technologies and computational tools that enhance biofuel production and biosystem design. … … The JGI has developed a suite of build-optimization software tools to streamline the design-build transition in …
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Metagenome Program
Program combines large-scale, time-series metagenomic data with detailed characterization of model systems to … evolution. The Program focuses on developing computational tools and visualization resources that support user analysis of biogeochemically-relevant pathways, …
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Synthetic Biology Informatics Group
Software engineers in the Synthetic Biology Informatics … CRISPR gRNA design tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, … and Golden Gate methods SynTrack and associated tools, which track samples through the JGI’s Synthetic …
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Fungal & Algal Program
… fungal and algal pangenomes, and integrate multi-omics tools to enhance functional studies. These efforts seek to … across the fungal tree of life or its major branches for users to characterize and propagate annotations across … sampling of fungi, laboratory analysis and genomics data exploration. … The Mycocosm web portal provides data …
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Natural Prodcast Episode 9: Roger Linington
… or NPAtlas, a freely accessible natural products structure database, which is going to be just invaluable to the … we’re now very much – we’re interested in how we can build tools which will let us see the whole landscape of natural … and new developments in mass spectrometry hardware, software, new developments in NMR methods, ultra fast …
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User Executive Committee
The UEC represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their science including technical capabilities … offered, proposal review procedures and the annual user meeting. The UEC also acts as a liaison to the user …
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Plant Program
With collaborative user projects, the JGI’s Plant Program delves into the … understanding of plant diversity and integrating various data types to explore the molecular mechanisms behind phenotypic evolution. It also utilizes advanced tools, including deep learning algorithms for gene …
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How To Use Our Systems
… … Information on Software Looking for information on our software, including BBTools ? Click to find that on our archive site.  …
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Microbial Program
The program provides high-quality, large-scale genomic data to advance microbial research that drives sustainable … The program aims to generate high-quality genomic datasets, particularly for uncultivated microorganisms, by … available genomes from three domains of life. It provides tools for analyzing the functional capability of microbial …
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User Executive Committee Charter
The JGI User Executive Committee (UEC) represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their science including technical capabilities …
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Natural Prodcast Episode 11: Marnix Medema
… center and a lot of the really important recent events in data analysis and secondary metabolism over the last decade or so. He’s involved with a lot of the common tools that genome miners use, including antiSMASH, MIBiG, … of biosynthetic gene clusters. So it’s actually a software tool and it takes as input – it takes genome …
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