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The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene … The DNA Synthesis Program aims to generate large datasets to explore sequence-function relationships, … innovative screening technologies and computational tools that enhance biofuel production and biosystem design. …

… bolster agricultural resilience. The program’s discoveries support a plant based bioeconomy where plants are a major … understanding of plant diversity and integrating various data types to explore the molecular mechanisms behind phenotypic evolution. It also utilizes advanced tools, including deep learning algorithms for gene …

Program combines large-scale, time-series metagenomic data with detailed characterization of model systems to … evolution. The Program focuses on developing computational tools and visualization resources that support user analysis of biogeochemically-relevant pathways, …

… (meta)genomic, (meta)transcriptomic, and functional genomic data and serving them to users via the Integrated Microbial … Genomes group is focused on:  Developing state-of-the-art data processing and analysis pipelines for the … Microbial Genomes & Microbiomes (IMG/M) system is to support the annotation, analysis and distribution of …

… characterize bioactive secondary metabolite compounds. To support users, our efforts include developing computational tools for predicting biosynthetic gene clusters (BGCs), … cell- and cell free-based expression platforms, tools and data for deciphering regulatory networks, and refining …

… of Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) integrates systems biology data and tools to help predict biological function.   To jointly support these missions, and to expand upon highly successful …

Group develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  … CRISPR gRNA design tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, … and Golden Gate methods SynTrack and associated tools, which track samples through the JGI’s Synthetic …

… fungal and algal pangenomes, and integrate multi-omics tools to enhance functional studies. These efforts seek to … gene markers, and producing environmental genomes to support both basic research and applied science. By … sampling of fungi, laboratory analysis and genomics data exploration. … The Mycocosm web portal provides data …

The program provides high-quality, large-scale genomic data to advance microbial research that drives sustainable … microbial functions and interactions, the Microbial Program supports innovations in sustainable agriculture, carbon … available genomes from three domains of life. It provides tools for analyzing the functional capability of microbial …

… examples of approved proposals, please visit the Proposals FAQ .  … The “User” signing the JGI User Agreement will be … then be used to submit proposals, sample and project metadata, and to access JGI tools and systems. … Go to the “ edit contacts ” page in …

Arizona Genomics Institute for DNA and RNA extractions to support plant and other efforts. The JGI works closely with … Energy Research Scientific Computing Center (NERSC) and data infrastructure projects—the DOE Systems Biology … (NMDC)—to provide access to datasets, workflows, and tools to seamlessly expand data functionality. Close …

… cells of the uncultivated SAR324. The constellation of data gave the team unprecedented resolution to study the … were also processed using the JGI-developed software suite, BBTools , and relying on the JGI Integrated Microbial Genomes …