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Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop …

… them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … advanced mass spectrometry techniques and computational tools, the program supports foundational research related to … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome …

… vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … fungal and algal pangenomes, and integrate multi-omics tools to enhance functional studies. These efforts seek to …

… and collaborators have the right to produce manuscripts for publication and the responsibility for leading the … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators and JGI … is done in a timely fashion. The publications resulting from such efforts should specify the collaborative nature of …

… components of JGI’s production workflow, and is responsible for the annotation and analysis of (meta)genomic, … data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The … species specificity of single cells and genomes extracted from metagenomes, and also as a metric for quality control …

… algae and plants. These molecules, which are not essential for fundamental growth, provide critical advantages to the … support users, our efforts include developing computational tools for predicting biosynthetic gene clusters (BGCs), … factors and determine their binding sites across multiple genomes. Computational prediction of heterologous …

Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds in the … States. They also provided multiple access points to the information. The team harnessed a community-science program to …

I wanted to tell you about in this introduction. First and foremost, our interview this week is with Professor Brian … in the early 2000s called Ecopia, which was a very early genome mining company, back when DNA sequencing of natural … an undergraduate and not succeeding and still using all the tools from mechanistic enzymology to natural product …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … DAN: Welcome back to Natural Prodcast! This is episode 4! From here on out, for a while, we’re going to be presenting some conversations …

… the product and deliverables as well as target cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will … Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … of secondary metabolism.  DAN: Hey there and welcome back for Episode 8 of Natural Prodcast. This week, we have our … learn how to make peptides, rationally. We’d find these tools, we’d understand them, and we’d apply them. And so, I …

… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m … chemical biology, a lot of which people classify as tool building. So I worked with a really great guy named … And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that …