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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational technology … The research efforts of the group have concentrated in demonstrating the power of data science in tackling grand …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their … genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses several experimental approaches to assess microbial activity across ecosystems.  By studying microbial …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … compounds, Alison. They are – if you can imagine – two carbons in a triple bond attached to two carbons in a double … genomic revolution, to me, as a natural part chemist for microbial natural product, is that I love microbial natural …
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Products
… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, DNA synthesis and … Program leads to discuss available options. Note: In 2021, we conducted an extensive internal product audit to … physical separation of a biologically relevant unit from a microbial community, such as a microcolony, microbial …
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Metabolomics Program
… Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to … exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With … supports foundational research related to soil nutrient cycling and health, terrestrial biogeochemical processes, …
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Plant Program
… collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global challenges by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, … development of complex biomolecules — which can include antimicrobial and anti-pest compounds.  The program is working …
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Natural Prodcast Episode 23: Aaron Puri
… for another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, … about. He works with methylotrophs, which are a group of carbon-fixing bacteria that I would say are are still fairly … to predict or just understand better the language of microbial cell-cell communication. And he told us about his …
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User Programs
… For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for … the user and no granting of funds.    Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics JGI-TMF …   Learn more about our individual calls and other opportunities to work with the JGI …
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Data Policy
… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It … FY22 and later through the Community Science Program (CSP), Facilities Integrating Collaborations for User Science … Embargo : A period in which data is not publicly available in JGI systems or …
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Plant Microbial Interactions Group
… fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all … how plants self-organize, influence, and are influenced by microbial partners. We use a variety of genomics-powered …
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Frequently Asked Questions: Proposal Submission
… submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific details including project types supported, sample/capacity limits, … The CSP and FICUS calls are open to both domestic and …
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FICUS
… The Facilities Integrating Collaborations for User Science (FICUS) call represents … on an accelerated timeline as compared with the standard CSP projects. In addition, they must utilize a broad range … Proposals for the annual FICUS call with EMSL begin with a Letter of Intent (LOI) from a researcher, briefly …
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