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DOE Metrics
… target is based on 98% of the total available hours.   FY 2020 DOE Metrics There were 2,038 unique* JGI users in FY2020 , which includes Principal Investigators (PIs), Co-PIs, … Goal   Goal (hours)**   Actual Total   Actual % Goal   FY 2020 Total   250.0 290.492 116% 7,932 5,616 70.8% Q1 2020 …
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User Programs
… the user and no granting of funds.    Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics JGI-TMF Critical Minerals and …
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Plant Program
… major focus are biofuel feedstock species and plant-microbe interactions, advancing efforts to create renewable energy … Plant Program is advancing research into plant-microbiome interactions, focusing on how environmental stress and … strategies that improve agricultural yields and support ecosystem health. By integrating cutting-edge technologies …
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Microbiome Data Science Team
… GEBA-type strains project ), the delineation of host-virus interactions, the exploration of the functional dark matter … resistance. Cell . 184(13):3376-3393 Almeida A, et al. (2020) A unified catalog of 204,938 reference genomes from … Schulz F, et al. (2020) Giant virus diversity and host interactions through global metagenomics. Nature …
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Metabolomics Program
… enhance our understanding of genome science, organisms, and ecosystems at the molecular level. Integrating genomics with … plants and microbes, and understanding microbiome interactions. The  insights derived are crucial for … roles in processes such as nutrient cycling, plant-microbe interactions, and environmental responses. The program …
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New Lineages of Life Group
… between microbes and eukaryotes and their impact on ecosystem function: We investigate the intricate networks of … microbes and their hosts. Our work reveals how these interactions shape ecosystem function, genomic innovation and environmental … strategies of giant viruses to low-temperature marine ecosystems .”  The ISME Journal , Volume 18 Issue 1. Pitot, …
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Natural Prodcast Episode 16: Marcy Balunas
… converged on the study of host-microbe chemistry. And the interactions– As much as we incorporate loads of different … in an environment in a place that it has stress and/or interactions with other bacteria or other hosts or just … if it were under the stressors and the environmental interactions that it has in the environment. And so in order …
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Frequently Asked Questions: Proposal Submission
… The CSP and FICUS calls are open to both domestic and … Agreement must be signed before work can begin, and all CSP proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to the CSP New Investigator call, investigators may have existing …
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Natural Prodcast Episode 4: Nancy Keller
… conference, which took place a few weeks ago, in January of 2020. So, you might hear us referencing a conference, and … the secondary metabolome, of fungi in inter-Kingdom interactions. So fungi, bacteria and their host. And I think … (SIMB) Natural Products meeting in San Diego in January 2020. You can find the podcast on Apple , Google , Spotify , …
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An Integrated Dataset to Understand Ecosystem Interaction
… partners. The Science To help better understand how ecosystems work and how healthy they are, a recent data set  … water-quality regulation. Focusing on the rhizosphere and interactions between the trees, microbes and soil chemistry … that can enhance our understanding of plant-microbe interactions — with potential applications in sustainable …
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Natural Prodcast Episode 11: Marnix Medema
… “BiG” branded family I think. Marnix Medema: Yeah. It’s an ecosystem of software right? Dan Udwary: For sure. Yeah. … that the expression of these gene clusters play in these interactions. But also things like trying to predict at … into families, which you can also look at in BiG-FAM . This ecosystem for secondary metabolism has become transformative …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… challenges. Oh, the magical world of the cow stomach. Rumen – and its microbes – are really a powerhouse. Rumen microbes have the ability to break down hardy plant … resource requirements of processing these sturdy materials, rumen microbes and their enzymes are an optimal study …
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