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DOE Metrics
… target is based on 98% of the total available hours.   FY 2020 DOE Metrics There were 2,038 unique* JGI users in FY2020 , which includes Principal Investigators (PIs), Co-PIs, … % of Goal Goal (hours)** Actual Total Actual % Goal FY 2020 Total 250.0 290.492 116% 7,932 5,616 70.8% Q1 2020 …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… pathways, which led her to a successfully funded JGI CSP project. And we also got to talk about work at her … coelicolor versus Streptomyces lividans. They both have the genes. The genes are pretty much 100% identical. We don't … in learning what biosynthetic gene clusters they might be regulating if they're regulating something that's distal …
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Frequently Asked Questions: Proposal Submission
… in. All proposals must be written in English. … The CSP and FICUS calls are open to both domestic and … Agreement must be signed before work can begin, and all CSP proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to the CSP New Investigator call, investigators may have existing …
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Secondary Metabolites Program
… can unlock new avenues for bio-based products and bioenergy crop enhancement. The program aims to tap into the … of new bio-based molecules that can drive innovations in bioenergy, sustainable agriculture, and other fields reliant … production to improving the resilience and productivity of bioenergy crops. … Development of cell-free based expression …
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Natural Prodcast Episode 14: Nigel Mouncey
NIGEL MOUNCEY: Sequencing the wazoo out of anything that’s relevant to the Department of Energy and their mission. And … team who have been really looking at ways to express genes in organisms that haven’t been used for really any … is fully online, and registration is free! Show Notes and Relevant Links: Learn more about CRAGE technology in An Age …
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Data Policy
FY22 and later through the Community Science Program (CSP), Facilities Integrating Collaborations for User Science … and Environmental Research Support Science (BERSS), or Bioenergy Research Centers (BRCs). Overview … Embargo : A … the embargo period data will be made publicly available on relevant JGI portals (i.e. JGI Genome/Data Portal, MycoCosm, …
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User Programs
… to the user and no granting of funds.   Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics Status CLOSED … of multiple user facilities Investigators with DOE mission-relevant projects that call for expansive sequencing, …
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FICUS-NERSC/KBASE
… facility pioneering functional genomics to solve the most relevant bioenergy and environmental problems.  The mission of the …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… of this is based on a really great paper that came out in 2020 where this is all explained in detail, so if you’d like … up with tryptophan, which will be the amino acid that is relevant for the synthesis of proteins, and will more often … the regulation off, rather than negatively get rid of the genes from their genome. FRANCISCO BARONA-GOMEZ: Exactly …
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Products
… design for a proposal, we encourage you to contact the relevant JGI  Science Program leads to discuss available … Constructs <5kb in size Single gene or multiple small genes assembled to less than 5kb in length, cloned into … Constructs 5-10kb in size Single gene or multiple small genes assembled totaling 5-10kb in length, cloned into …
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Microbiome Data Science Team
Science 2017, Nature Microbiology 2018), discovery of new genes with important biotechnological applications (e.g., … resistance. Cell . 184(13):3376-3393 Almeida A, et al. (2020) A unified catalog of 204,938 reference genomes from … Nature Biotechnol.  39(1):105-114. Schulz F, et al. (2020) Giant virus diversity and host interactions through …
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Single Cell Research Group
… through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., Leahy S. C., Attwood G. T., Teh K. H., … Z. & Rubin E.M. Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science 331, 463-7 (2011). …
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