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Plant Program
… to environmental changes. The program lays the groundwork for sustainable solutions to current problems facing … understanding of plant diversity and integrating various data types to explore the molecular mechanisms behind phenotypic evolution. It also utilizes advanced tools, including deep learning algorithms for gene …
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Products
… sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will … ) 108/161 Viral Enrichment Draft quality assembly from virus pools/plaques obtained from a single host, many …
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Natural Prodcast Episode 9: Roger Linington
… … DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I … or NPAtlas, a freely accessible natural products structure database, which is going to be just invaluable to the … we’re now very much – we’re interested in how we can build tools which will let us see the whole landscape of natural …
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DNA Synthesis Program
… bioenergy solutions.  The program has been a pioneering effort in functional genomics since 2012, with a focus on … The DNA Synthesis Program aims to generate large datasets to explore sequence-function relationships, … innovative screening technologies and computational tools that enhance biofuel production and biosystem design. …
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Natural Prodcast Episode 11: Marnix Medema
… last decade or so. He’s involved with a lot of the common tools that genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM … 10 or 20 genomes at once then we really need to have automated tools for this. Because well, you can’t do this …
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Metabolomics Program
… molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, … advanced mass spectrometry techniques and computational tools, the program supports foundational research related to … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome …
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Natural Prodcast Episode 12: Nadine Ziemert
… welcome, Nadine. ALISON TAKEMURA: What is the big picture for you in your lab? NADINE ZIEMERT: Big picture, I want to … more into the meta genome mining. We started to build the tools for natural product researchers that easily can … even in primary metabolism or in certain snips of viruses or something. I don’t know. Then I think making sure …
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Natural Prodcast Episode 18: A CSP Primer
It’s been a while, but Natural Prodcast is back again for another round of episodes. If you stick around for the … did those sequences go? Like, what are the other scientific tools we offer people? TANJA WOYKE: Yeah. Also a really good … the submission. And so there’s specific areas that they’re assessing, which scientific merit is key. Is it relevant to …
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Secondary Metabolites Program
… algae and plants. These molecules, which are not essential for fundamental growth, provide critical advantages to the … support users, our efforts include developing computational tools for predicting biosynthetic gene clusters (BGCs), … cell- and cell free-based expression platforms, tools and data for deciphering regulatory networks, and refining …
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Fungal & Algal Program
… vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and … fungal and algal pangenomes, and integrate multi-omics tools to enhance functional studies. These efforts seek to … sampling of fungi, laboratory analysis and genomics data exploration. … The Mycocosm web portal provides data …
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Natural Prodcast Episode 15: Katherine Duncan
… the idea of taking all the different natural products data that there is and putting things, coalescing them, so … I think it must’ve been about 2001, maybe, and so it was before smartphones and before laptops and everything. And I … that I’ve appreciated since starting my own group is these tools, in terms of looking at the chemistry produced by …
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Natural Prodcast Episode 17: Cassandra Quave
… … Dan Udwary: Hey everybody! Welcome back for Natural Prodcast episode 17. The guest we have this week … primates should they pass the next steps in terms of live virus testing. So having that ability and willingness to … get a DNA sequence first. And there are plenty of software tools to find natural product gene clusters, and even be …
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