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How to Submit Sequencing Samples
Below is a brief description of the process needed to prepare and ship samples for … sample-level metadata such as sample IDs and names, QC results, SRA accessions, library names, and protocol and … a project, metadata about the samples, and the sample QC results. … DNA and RNA Sample Preparation … Sample Shipping …
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Natural Prodcast Episode 6: Marc Chevrette
… … DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … his PhD. Warp Drive was a really interesting place, in terms of secondary metabolism research, and I hope to be … Illumina technology, which is usually what we refer to as “short reads”. So that kind of resolution isn’t sufficient to …
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Natural Prodcast Episode 14: Nigel Mouncey
… … DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took … is spinetoram which is a semi-synthetic derivative of an intermediate in the spinosyn pathway. And so both of these are … called the Earth Secondary Metabolome Initiative, ESMI, for short. And it’s really combining our work in sequencing and …
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Natural Prodcast Episode 7: Ben Shen
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … microbiome, as I think that it’s like a perfect storm in terms of fundamental knowledge and enabling technology, but … bacterial speciesism is pretty sketchy anyway. BEN:  So in short I think that this is a really remarkable collection. …
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The Big Deal About Short Plants
Despite their diminutive stature, “short plants” such as mosses could be uniquely powerful in … sequences to what they do. But sequencing the genome of one short plant — fire moss — had an unexpected …
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Natural Prodcast Episode 18: A CSP Primer
… while, but Natural Prodcast is back again for another round of episodes. If you stick around for the next few months, … generating these data sets. There’s a lot of manual work in terms of the annotate, the assembly, the curation, QC, … expertise to do the bioinformatics and to synthesize these results into publication? So there’s this really important …
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Natural Prodcast Episode 23: Aaron Puri
… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … that I would say are are still fairly unexplored in terms of their natural products chemistry, and he has a … AARON PURI: Yeah. It’s a great question. So that yeah– the short answer is yes, you can genetically manipulate them. …
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … authority to commit your institution or organization to the terms and conditions in the User Agreement.  These include, … will be required to flow down the User Agreement terms to the collaborators. The lead institution will be …
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Natural Prodcast Episode 15: Katherine Duncan
… here today, and we wanted to talk to her about a whole list of things. So we have a Scripps background shared together, … that we do that is trying to understand what’s important in terms of the chemistry produced by microbes. And by what’s … with bigger data sets and integrated data sets. So yeah, in terms of, I guess, fields of science, we span across them. …
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Natural Prodcast Episode 24: Jackie Winter and SMC
Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A little bit of a bonus episode, since … UCSD. So I was with Brad during my PhD, and then I did a short postdoc with Christian Hertweck in Jena in Germany and … microorganisms from Great Salt Lake, which is a hypersaline terminal lake about 30 minutes away from campus. And we’re …
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Natural Prodcast Episode 8: Eric Schmidt
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … everywhere. They’re at the base of the animal kingdom, in terms of evolution. Because they’re sitting there, they tend … hearing you describe the project. Could you just give a short primer for someone who is familiar with biology, but …
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Natural Prodcast Episode 16: Marcy Balunas
… anyone else.  DAN: Yeah. I mean fine in pandemic adjusted terms right?  MARCY: Yes–  ALISON: Yeah.  MARCY: Exactly.  … know that that’s ever necessarily like a good description of anyone because chemistry means a lot, especially when … honeybee. And so I have multiple opinions which I’m never short of but. In terms of thinking about these sparse …
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