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Natural Prodcast Episode 6: Marc Chevrette
… in the project by watching Amanda Hurley’s presentation from the 2019 JGI Genomics of Energy & Environment Meeting.] … we worked together at the late great Warp Drive Bio, a biotech startup where we did genome mining together. Marc was … metabolomics, and natural products in plants, fungi, and microorganisms. If you want to collaborate, let …
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Natural Prodcast Episode 3: The Primer, Part 3
… in this field, and written pretty close to the level of technical detail that I think we’re doing here. If you have … maybe it’s a new culture of a new bacteria that you pulled from the soil, maybe it’s, you know, we talked about … been shared for a long time by many, many bacteria – and fungi and plants. And so that’s the power and the promise …
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Plant Program
… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … agricultural productivity. Research spans diverse areas — from understanding how terrestrial plants and phytoplankton … and support ecosystem health. By integrating cutting-edge technologies and data-driven methods, the program equips …
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Natural Prodcast Episode 16: Marcy Balunas
… that there wasn’t enough application there. And so I moved from there to plant natural products, getting a PhD in … working on that aspect and it’s quite active against some fungi. But we’re also really interested in distribution. So … symbiosis, and a JGI project around ants and their fungus farms.  Relevant Links Some of the work we discussed about …
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Natural Prodcast Episode 1: The Primer, Part 1
… and the environment – problems that might need special technology for DNA sequencing, genomics, metabolomics, and … natural chemical compounds that you find in plants, fungi and bacteria, basically all living things. When your … If you’re an expert in the field, you can probably skip straight on to Episodes 4 5 and 6, for some fun interviews, …
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Natural Prodcast Episode 20: Brian Bachmann
… our interview this week is with Professor Brian Bachmann from Vanderbilt University’s Chemistry Department, where he … And at the time, nobody was interested in licensing that technology or doing anything with it. So I was kind of … to directed evolution– but it’s just the– it really is a straight line going right back to my sophomore year of …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… you’ll be hearing about microbiology and natural products from the Great Salt Lake, and you’re going to learn, like … with Christian, I started getting a little bit more into fungi and learning the differences of all the genetic … a lot of people have a lot of different sort of tools and techniques that they bring to it. And we try to learn as …
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Natural Prodcast Episode 17: Cassandra Quave
The guest we have this week is Professor Cassandra Quave from Emory University, with joint appointments in the School … every year in the US and it has since 2005 even though we technically have a number of different antibiotics in our … nothing for. We’re also working on organisms, pathogenic fungi like Candida aureus in the lab and we work on …
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JGIota: A Biofuel Breakthrough in Anaerobic Fungi with Michelle O'Malley and Tom Lankiewicz
Santa Barbara discuss the importance of studying anaerobic fungi, as well as a recent discovery that turns scientific … its head and opens up a new avenue to explore for efficient biofuel production. …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… over our interview with Dr Elizabeth (or Betsy) Parkinson from Purdue University. She’s in the Department of Chemistry … him, I was working on the natural product dioxin ubiquinone, which actually comes from a marine bacterium. And so, I … what DAP-seq is. [Note: Check out this JGI story on DAP-Seq technology.] BETSY PARKINSON: OK. DNA affinity purification …
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Special Initiatives & Programs
… the JGI will only be accepted pending available capacity, technical review and scope negotiation with the JGI.  … with grants funded by DOE-BER requiring support from the JGI may  submit proposals here . Investigators … research in the development of cellulosic ethanol and other biofuels, advancing the federal initiative that seeks to …
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Metabolomics
Metabolomics strengthens -omics technologies at the JGI by identifying the actual molecules … JGI Metabolomics Platform delivers rich metabolite profiles from diverse biological and environmental samples using … experimental samples, including organisms (e.g. microbes, fungi, plant), media in which they grow, as well as …
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