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Natural Prodcast Episode 14: Nigel Mouncey
… screening platform where we’d look at 10,000, 15,000, 20,000 mutants a week. We started doing a whole bunch of … development lab and research lab all the way from Ambr250 fermenters to 2 liter Dasket fermenters to 30 liter … 30 to September 1st. The link is found all over JGI’s web pages.  DAN: And I will put it in the show notes along with …
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Polar Phytoplankton Need Zinc to Cope with the Cold
Science Program (CSP) .  Through this collaboration, in 2017, they published the first genome sequence of a … publicly available at the PhycoCosm portal . Byline: Menaka Wilhelm   … The U.S. Department of Energy Joint Genome …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… version of a specific chemical, where ordinary Carbon-12 atoms are swapped for the heavier, non-radioactive isotope … for SIP  Recently, Purdue researcher and JGI user Roli Wilhelm set out to do a SIP-fueled meta-analysis with a … that's helping people do a better job curating the data,” Wilhelm said. Informed by other community-driven standards …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… of this is based on a really great paper that came out in 2020 where this is all explained in detail, so if you’d like … and evolutionary biologists more recently– we and my co-authors thought that it was time to put a little bit of … This is not new. It actually was first proposed by two authors called Firn and Jones. I’m sure that people excited …
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SIPs with Standards
… and analyses. This episode, Rex Malmstrom (JGI), and Roli Wilhelm (Purdue University), share a few different ways …
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Natural Prodcast Episode 11: Marnix Medema
… to tell a quick story. Looking back, the year was probably 2010, 2011, I was a, uh- actually, I’ve got the t-shirt on today. … from around the world contributed with, well, more than 150 authors of the paper in the end. And it was actually a fun …
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JGI Launches Latest Strategic Plan
For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one … Biosciences Associate Laboratory Director, of the 100-page document with over 200 actionable milestones. JGI … leadership role in a Microbiome Data Science effort (pages 37-39) and the launching of a Secondary Metabolites …
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JGI Welcomes New UEC Members
… and career stages. The election period concluded on October 21. The results are in and JGI extends a warm welcome to the … To view the full roster of members visit the UEC page . …
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Gut Fungi: Unexpected Source of Novel Chemicals
… californiae , and Piromyces finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. … In the lab, O’Malley and her team — notably, first author Candice Swift — verified that the fungi expressed … Fellowship, and the UCSB Connie Frank Fellowship. The authors acknowledge support from the Center for Scientific …
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Plant-Microbial Interactions Group
… patterns in root cross-sections. … 10.1038/s41579-020-0381-4 10.1038/s41396-020-0637-z 10.1038/s41477-024-01666-3 10.1016/j.celrep.2023.112676 …
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Busting the Unbreakable Lignin
… lignin can, in fact, be deconstructed without oxygen. Lead author Tom Lankiewicz cultivated anaerobic fungi … eventually yield new biotechnological opportunities.  … The authors acknowledge their funding sources: Office of … Research of the U.S. Department of Energy grant DE-SC0020420 (MAO), Institute for Collaborative Biotechnologies …
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Viral Genomics Group
Genomics group . Research Team … Coclet, C. and Roux, S. (2021) Global overview and major challenges of host prediction … phages.  Current Opinion in Virology .  49 , 117-126 Berg, M. and Roux, S. (2021) Extreme dimensions — how big …
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