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Plant Program
… to regulate Earth's carbon balance, to exploring the genetic basis of how plants have naturally adapted to varied … climate and soil conditions around the globe to identify genes to improve our domesticated species.  The program … including deep learning algorithms for gene annotation and protein folding models, to improve the accuracy of functional …
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Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria
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Natural Prodcast Episode 7: Ben Shen
… from which potentially natural product could be biosynthesized, then you need to develop enabling technologies. ie … penicillin from the fungal species – probably told us that fungi could be very productive sources for, say, biological … national resources. So, you may know the so-called Nagoya protocol, which prevents taking bio-resources from the native …
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DNA Synthesis Program
… Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, … the program enables the design and synthesis of complex genetic pathways and biosystems. It The program fosters … in advancing functional genomics, focusing on developing genetic systems that can address global energy and …
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Natural Prodcast Episode 4: Nancy Keller
… So it was great to hear her passion and enthusiasm for fungi. And we talk a lot about some of the technical … After I got my undergraduate degree, which was in general biology, I joined the Peace Corps. And when I was … asexual spore, some might be in these things we called sclerotia, which are overwintering bodies. So the complexity …
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Natural Prodcast Episode 14: Nigel Mouncey
… my undergraduate in microbiology and then PhD in microbial genetics in the UK. And came across to the US for a couple … of things. Full stretch all the way from a well into microtiter plate all the way up to supporting 200,000-liter … which, at least at the time, was called Inatreq . It’s a fungicide that is active against Sartoria which is a really …
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Natural Prodcast Episode 5: Brad Moore
… them that it looked to be of a certain number of modules in size, they then quickly were able to then solve the … on marine actinobacteria. Then we moved into marine proteobacteria. Not a big leap, but then we began looking at … metabolomics, and natural products in plants, fungi, and microorganisms. If you want to collaborate, let …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Bacterial enzymes play second fiddle to those from fungi when it comes to breaking down tough plant fibers. The … teems beneath your feet. Both bacteria and fungi have genes that can break down plant fibers. But are they both … detailed database on the denizens in the soil. While large protein databases, like UniProt, exist, are not specific …
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Forest Fungi, Seagrass, and a New View of Symbiosis
… Martin and Lucas Auer discuss their work on communities of forest floor fungi. Allison Joy looks into seagrass meadows' carbon … research on the symbiotic relationship between mycorrhizal fungi and plant roots.  …
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JGI Portals
… critical requirements for amplifying the JGI’s impact. Data generated from a single investment will be reused for … host taxonomy, conjugation potential, antibiotic resistance genes, and ecosystem information. … and analysis tools for comparative genomics of fungi. Mycocosm enables users to navigate across sequenced …
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From Competition to Cooperation
… had ever been done before to look at how multiple forest fungi have independently evolved to establish symbiotic … how fungi that feed on decaying plant matter (saprotrophs) have transitioned to the symbiotic lifestyle. The … There are three types of fungal saprotrophs in the forest. White rot can break down the cellulose, hemicellulose, and …
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Natural Prodcast Episode 19: Bill Fenical
… world. We used ships. We used land-based marine labs. We wrote cooperative grants with people in other countries. And … from the ocean. We didn’t know whether to study bacteria, fungi, archaea, the whole range of microbial life. So, we … 2,000, 5,000 different cells, different colors, different sizes, different shapes, motility, all this stuff. But when …
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