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… is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, … mSystems. 5 (3) Schulz et al. (2018) Hidden diversity of soil giant viruses. Nature Communications. 9 (1), 1-9 Schulz …

When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  … several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an …

… addressing key environmental challenges, such as improving soil health, carbon sequestration and bioeconomy … laboratory isolation and genome sequencing of underexplored bacterial and archaeal lineages that are important for … resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from …

… there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And I think … it would work, but we actually found fosmids. And we sequenced the whole fosmid at the time with Sanger … of these environments? NADINE ZIEMERT: So we started with soil. But we also have, in collaboration with other people, …

… or online catalog, I guess. So we've also been able to get soils from Purdue campus itself and been able to actually … The genes are pretty much 100% identical. We don't know why one is expressed over the other. As far as whether we're … usually serve as dimers, and then they will bind to certain sequences of DNA. And when they bind to those certain …

… activity across ecosystems.  By studying microbial communities and their interactions, the Program aims to … focuses on the high-throughput sequencing of microbial communities to uncover the complex interactions and … comprising the largest public collection of plasmid sequences identified from genomes, SAGs, MAGs, metagenomes …

… about the basics of genome mining, which is using DNA sequence to identify and interpret biosynthetic, secondary … biological perspective, like what was this bacterium, and why did your group want to study it? Marnix Medema: You mean … the action of the microbiome because if you sterilize the soil, the protective effect is gone. You can transplant the …

… cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and … viruses. Resident viruses can be found in a myriad of bacterial strains, whereby they can modulate host … function of these phage genes is the modulation of their bacterial host to colonize plant roots, as with Arabidopsis …

… by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and adapting to … focusing on how environmental stress and microbial communities affect plant growth and productivity. These … manipulation in the laboratory. Both germplasm (sequenced mutants and natural accessions) and protocols …

… the program supports foundational research related to soil nutrient cycling and health, terrestrial biogeochemical … samples — including microbes, fungi, plants and soils. Through a combination of experimental workflows and … to analyze metabolites in environmental organisms, communities, and samples including state-of-the-art …