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… and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to identify new divergent lineages and expand the Tree of Life. We then investigate …

When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  …

… recent work like ActDES, which is a curated database of actinobacteria for evolutionary studies, and hopefully we … least, talk to us, first about my definitions of things and why I am wrong, and also talk about some of the great … to approach it is more related to what JGI does, which is sequence genomes. And we just published last year in the …

… and state-of-the-art next-generation sequencing to enable biological discovery by the JGI and external DOE … the latest  sequencing technologies has allowed the JGI to increase sequencing output while significantly lowering … for sequencing. They apply Lean Six Sigma practices to process optimization and development approaches, testing …

… cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying … genome sequencing of underexplored bacterial and archaeal lineages that are important for bioeconomy applications. By … resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from …

Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI. … permission) demonstrate the importance of proper nucleic acid quantification in our Illumina and PacBio sequencing … pipelines.  You will receive automated emails as raw sequence data becomes available, and as analysis is …

… a couple biology classes in undergrad, but my PhD was an actinobacteria. And I tell all my students this now, but … Duncan: Yeah. I love actinomycetes. Dan Udwary: Tell us why. I mean, I know, but I think– Alison Takemura: I want to … of almost finished characterizing them. We’ve got genome sequences, which are just incredible. We’ve looked at the …

DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural … more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … for us– what organisms people use for genome mining, why it’s called genome mining, how the biosynthetic gene …

Research in the Woyke laboratory focuses on the utility of single-cell methods to access … is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which … While uncovering the metabolic potential of uncultivated lineages is of high value to establish models and …

… as well as target cycle times from sample receipt to completion of standard analysis.  Raw data is provided … sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … analysis Relative abundance profiling of polar (e.g. amino acids, nucleosides, etc) metabolites using normal phase …

… there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And I think … so far no species or no strains known that really grow in freshwater. But they’re actually pretty orange, and they … it would work, but we actually found fosmids. And we sequenced the whole fosmid at the time with Sanger …