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Secondary Metabolites Program
… algae and plants. These molecules, which are not essential for fundamental growth, provide critical advantages to the … computational analyses of BGC size and complexity, BGC sequence composition, metabolic similarity & compatibility, and signatures of …
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Natural Prodcast Episode 13: Francisco Barona Goméz
Mexico, and an incredibly bright guy who’s been thinking for a long time about the evolution and natural products … least, talk to us, first about my definitions of things and why I am wrong, and also talk about some of the great … to approach it is more related to what JGI does, which is sequence genomes. And we just published last year in the …
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Products
… to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … (e.g. secondary metabolites, lipids, etc) metabolites using reverse phase chromatography coupled to tandem mass …
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Synthesis
The Joint Genome Institute's DNA Synthesis Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is done by … user project design, assembly, and quality control Strain Engineering Group : a research & development group and …
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Natural Prodcast Episode 14: Nigel Mouncey
… … DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot … products projects that we had in my group which was bioengineering bio-process R&D, BBRD, a group of about 75 … to some people more about down the road. Email Nigel! He’ll sequence whatever you want!  [LAUGHTER]  NIGEL MOUNCEY: We …
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Sequencing Submission Requirements for DNA Synthesis
When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  Miranda … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …
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Publication Policy
… and collaborators have the right to produce manuscripts for publication and the responsibility for leading the … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any other … genomics data types as well as in advanced assembly and engineering strategies for DNA synthesis applications. If …
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Natural Prodcast Episode 12: Nadine Ziemert
… there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And I think … welcome, Nadine. ALISON TAKEMURA: What is the big picture for you in your lab? NADINE ZIEMERT: Big picture, I want to … it would work, but we actually found fosmids. And we sequenced the whole fosmid at the time with Sanger …
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Natural Prodcast Episode 24: Jackie Winter and SMC
Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and ready … is like, what’s your origin story in natural products? Why are you doing this? JACLYN WINTER: I’ll kind of go back … have an E. coli strain that we’ve been working on that we sequenced the genome. And it has 17 resistant genes on a …
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Strain Engineering
The focus of this group, in recent years, has been to bring … a taxonomically diverse suite of microbial chassis strains for elevated opportunity for expression. Research Team    … For further details, …
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Sequencing Technologies
Group applies cutting edge molecular capabilities and state-of-the-art next-generation sequencing to enable biological … significantly lowering costs. Staff process samples, perform quality checks, and prep libraries for sequencing. They apply Lean Six Sigma practices to …
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DNA Synthesis Program
… bioenergy solutions.  The program has been a pioneering effort in functional genomics since 2012, with a focus on … Program aims to generate large datasets to explore sequence-function relationships, advancing the discovery of … analyzing enzymes to support mission-driven research. Rapid Metabolic Engineering: Metabolic engineering traditionally …
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