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… around the globe to identify genes to improve our domesticated species.  The program supports the development … learning algorithms for gene annotation and protein folding models, to improve the accuracy of functional predictions … function research. The  Open Green Genomes (OGG) project seeks to develop comparative high quality genomes and …

… of academia, or if you want to understand what it’s like to do field science as a woman and with a physical disability, … CASSANDRA QUAVE: OK, great. Well, hey, it’s so great to see both of you, Dan and Alison. And I strangely feel like I … or fat. ALISON TAKEMURA: Is the “enfleurage,” is that “in flower”? What does that mean? CASSANDRA QUAVE: Also “in …

Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the … Third parties (often referred to as “data users”) cannot see this data. Use-Restriction : A period in which data is … utilization except as outlined in the Publication Policy. … Legacy JGI Data Release & Utilization Policies may be read …

… a sustainable bioeconomy. ALL PROPOSALS must support the DOE/BER Mission Areas we serve, see below.  … The U.S. Department of Energy (DOE) Joint … sequencing scores of microbial species as well as several model organisms and contributing this information freely to …

… check it out. You can get more info at usermeeting.jgi.doe.gov . And I’ll be sure I put that link in the show … because my kids have no interest as far as I can tell. They see me every once in a while grow some plates in– [LAUGHTER] … as the fermentation process itself. And we built a nice modeling feedback loop for the fermentation work, which …

… us about forthcoming efforts in paired-omics data sets and seeking to interpret function from BGCs. It’s a long, wide … I needed more people to work on things, and to actually do some chemistry. And a few months after I submitted one of … I think this is really– I personally like this really as a model for a collaboration. You have your code as open source …

… that city is where I first met Roger, when we were both postdocs at Scripps Institution of Oceanography. Roger was … the things I wanted from that experience was the chance to see what the industrial life was like. And I think I learned … we’d done by hand, in order to build a machine learning model that would look at all of the data that’s in PubMed, …

… and exploiting biocatalysts – that is, using enzymes to do chemical reactions. Obviously, in my work, in genome … I hope that doesn’t get me canceled.The monthly schedule seems to be working out, so expect lots more to come. Maybe … we would end up with dead enzymes. So often, when you start monkeying around with your active site– DAN UDWARY: Sure. …

… of Energy Joint Genome Institute, or JGI. JGI is a DOE Office of Science User Facility located at Lawrence … molecules that they’re sharing and expressing, and that it seemed like we didn’t know very much about that world yet. … environment or produce themselves. It’s the pigments in flowers. It’s communication molecules that some organisms …

… in the plant growth-promoting rhizobacterium (PGPR) Pseudomonas simiae WCS417. One suggested function of these phage … phage function in this tripartite plant-bacterial-phage model system. We seek to expand beyond this model system by identifying …

… metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables exploration of energy … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome … in living systems, particularly as they relate to DOE missions in the bioeconomy, sustainability, and …

… and a chance to talk about all the cool work she’s doing over at the University of Utah. So, you’ll be hearing … DAN UDWARY: So I get all the podcast stats, right? And so I see all the download numbers. And so one of the things I’ve … And so we also sequence a lot of fungi, and we sequence plants. And so we started thinking about if we had a …