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Synthetic Biology Lab
The Synthetic Biology lab is divided into a DNA synthesis production group and a … to improve automated assembly pipelines bringing in new technologies, in particular through adoption of lab automation enabling ever-higher levels of throughput. We …
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Metagenome Program
… approaches to assess microbial activity across ecosystems.  By studying microbial communities and their … based on functional traits. These advancements provide new insights into microbial ecosystems.  The Program also … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and …
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New Lineages of Life Group
… viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to identify new divergent lineages and expand the Tree of Life. We then … of metagenomic assembly and binning of a giant virus. mSystems. 5 (3) Schulz et al. (2018) Hidden diversity of soil …
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Programs & Platform Leads
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Partnerships Development Team
Business Development Team works closely with the Berkeley Lab Intellectual Property Office to facilitate these new interactions.  The PDT enables industry engagement … to license Lab inventions generated through the CRADA.  … New Leaf Symbiotics is partnering with the JGI and Berkeley …
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Single Cell Research Group
Giant virus diversity and host interactions through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri … (2017). Bowers R. M., Kyrpides N. C., Stepanauskas R., … Banfield J. F., Hugenholtz P., Woyke T . Minimum information … (2017). Woyke T . & Rubin E.M. Evolution. Searching for new branches on the tree of life. Science. 346:698-9 (2014). …
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CSP New Investigator Call
The CSP New Investigator Call is for investigators and research … the JGI’s sample requirements . Samples that are not available in a timely manner will delay processing, while … Woyke, Deputy for User Programs. Technical and Scientific Leads will also be available to answer any questions prior …
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Natural Prodcast Episode 7: Ben Shen
… schedule for a while. Moving forward, I’m hoping to get a new one out every two weeks. This time, we’ve got a great … on DNA sequencing and synthetic biology. But also the metagenomics and gut microbiome, as I think that it’s like a … “development”. So discovery is you find all the innovative leads, and then development is taking the lead into a …
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Natural Prodcast Episode 14: Nigel Mouncey
… everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took a little … natural products for agriculture, and his upcoming new role as the Society for Industrial Microbiology and … in these different organisms. We’ve now just built out a CRISPR based system that we can use to activate the …
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How To Use Our Systems
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Microbiome Data Science Team
… approaches in data analysis and interpretation is creating new opportunities for breakthrough discoveries and … with important biotechnological applications (e.g., new CRISPR-Cas variants and new CRISPR-Cas types) (Nature … (2023) Unraveling the functional dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. …
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Metabolomics
… of the role small molecules play in diverse biological systems, sheds light on nutrient cycling, and leads to the discovery of new molecules and pathways. The JGI Metabolomics Platform …
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