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CSP Functional Genomics
… The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them translate … data usage by the applicant/community, and track record of the applicant.  Learn about the general review process or … timely manner will delay processing, while samples that are of insufficient quality or quantity will preclude approval …
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New Lineages of Life Group
… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use … We then investigate the coding potential to find novel functions that may impact microbiome structure and …
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Environmental Genomics Group
… and characterize genomic information from uncultivated microbes and viruses. We develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … better understanding of microbial communities and ecosystem function.  The Environmental Genomics group also hosts the …
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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … and the bacteria provide nutrients for the plant mainly by fixing nitrogen. Getting nitrogen from the environment so that the … This the second episode of Natural Prodcast, which continues a conversation from the …
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Microbial Program
… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … associated with microeukaryotes, enhances our understanding of terrestrial biogeochemical cycling and inter-organismal … applications. By expanding our knowledge of microbial functions and interactions, the Microbial Program supports …
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Plant Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … and are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, … in additional plant and bacterial species of bioenergy importance. …
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Metagenome Program
… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … By understanding how microbes contribute to ecosystem functions, the Program helps drive innovations that could … communities to uncover the complex interactions and functions that shape ecosystems. By decoding the microbial …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … Parkinson from Purdue University. She’s in the Department of Chemistry and the Department of Medicinal Chemistry and … fun that we've started that is a different subject is from microbes to medicine labs. So this is-- we've been working …
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Natural Prodcast Episode 20: Brian Bachmann
… DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell … them on a regular basis. So they are full of terrestrial microbes. So they’re open ecosystems. They’re not sealed off … group area of my group now has become– so we call it “Fixing the Unfixable” projects, where you take a natural …
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Sequencing Technologies & Products
… well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. This … the JGI’s focus on expanding molecular capabilities and functional genomics, scaling capacity through end-to-end … An assay used for profiling transcription factor binding sites across entire …
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Natural Prodcast Episode 18: A CSP Primer
… while, but Natural Prodcast is back again for another round of episodes. If you stick around for the next few months, … to find info about the CSP, FICUS, New Investigator and Functional Genomics calls. For my audience, all of these … where smaller proposals may be a fit. Still not 20 many microbes. We still we work in plates, right? We’re a high …
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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the … processes, development of high performance plants and microbes, and understanding microbiome interactions. The  …
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