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Project Management Office
The JGI Project Management Office carries out a number of activities to facilitate world-class science. PMO works with users, JGI scientists and technical staff to onboard users and guide them through the process of working …
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Projects
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Frequently Asked Questions: Project Management
Eukaryotic projects: Kerrie Barry or Vivian Ng Prokaryotic projects: … Tijana Glavina del Rio , Danielle Graham , or Miranda Harmon-Smith DNA Synthesis projects: Miranda Harmon-Smith … be accessed via the Genome Portal , at the following sites: Microbes: IMG (citation: https://doi.org/10.1093/nar/gkaa939 …
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Microbial Program
The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis … techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … with isolate collections to complete large-scale sequencing projects, including 10,000 Actinomycetota strains and 10,000 …
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Metagenome Program
… advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work encompasses bacteria, archaea, and … to information regarding genome and metagenome sequencing projects, and their associated metadata, around the world. … …
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Natural Prodcast Episode 17: Cassandra Quave
… curator there, with a broad range of experimental work on plants for drug discovery in antibiotics, anticancer, and … find me. And really it was my third grade science fair project where I first looked into a microscope and just fell … a really interesting field that I guess– so I’m more of a microbe guy, and as is Alison, or not a guy, but [LAUGHS] a …
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Mission
JGI Mission As a U.S. Department of Energy Office of Science user … the completion of DOE’s commitment to the Human Genome Project , the University of California, which manages … it shares with the staff of the DOE Systems Biology Knowledgebase (KBase) and the National Microbiome Data …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… it. I’m keeping to my schedule. This should be coming out on the first Thursday of the month, just like I promised. … pathways, which led her to a successfully funded JGI CSP project. And we also got to talk about work at her … fun that we've started that is a different subject is from microbes to medicine labs. So this is-- we've been working …
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How to Submit Sequencing Samples
Below is a brief description of the process needed to prepare and ship samples for … the process. If you have any questions, please contact your Project Manager or jgi-project[email protected] . … 1) Review JGI sample QC …
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Natural Prodcast Episode 11: Marnix Medema
… about natural products and the science and scientists of secondary metabolism. Hey there, and welcome back to Natural … the professor was actually quite enthusiastic about the project and he arranged funding to do it nonetheless from … a nice example of going from a whole community with many microbes, hundreds of gene clusters, and then being able to …
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Data Policy
… are subject to the following Data Policy. It is our mission to support open data and information sharing. We also … for the remainder of this policy) produced through all user projects accepted FY22 and later through the Community … for their planned work.   … For sequencing or metabolomics projects: data are subject to a  one-year embargo .  For …
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Natural Prodcast Episode 18: A CSP Primer
… round of episodes. If you stick around for the next few months, you’re going to hear my last interview with my … is kind of like a CSP, but you would be proposing a larger project that requires the work of two or more DOE user … scale is pretty unique in that we don’t just sequence one microbe for you, we sequenced thousands for you or thousands …
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