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Microbiome Data Science Team
… analysis and interpretation is creating new opportunities for breakthrough discoveries and catalyzing a major … ( GEBA-type strains project ), the delineation of host-virus interactions, the exploration of the functional dark … Nat Microbiol . 6(7):960-970. Nayfach S, et al. (2021) CheckV assesses the quality and completeness of …
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Data Policy
Data produced and released by the US Department of Energy … Data Policy. It is our mission to support open data and information sharing. We also recognize the need to have a … research data and analysis products (referred to as “data” for the remainder of this policy) produced through all user …
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Data Ecosystem
To expand access to integrated data, improve tools and infrastructure as well as ensure … to both expertise and infrastructure to facilitate these efforts. Particular areas of emphasis will be the development …
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An Automated Tool for Assessing Virus Data Quality
CheckV can help researchers assess virus sequence fragments … virus sequences vary widely. In a previous effort, an international consortium recommended specific … to this point, there has been a lack of fast and accurate tools for researchers to assess the quality of …
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Synthesis
The Joint Genome Institute's DNA Synthesis Platform capabilities support researchers exploring how to … group and focused on new technologies and optimizing tools — including strain engineering — to make them more … Synthetic Biology Informatics Group : a team that develops data science tools for workflow management and novel …
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Data Policy & Support
… … Read more about our data management practices and the resources we provide. … Read our research integrity and data code of conduct. … Data Management at the JGI … JGI Scientist Code of Conduct … …
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Metagenome Program
… archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. Beyond exploring and … diversity and metabolic potential, with implications for energy production, environmental sustainability, and … evolution. The Program focuses on developing computational tools and visualization resources that support user analysis …
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How to Submit Sequencing Samples
… of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … GenTegra RNA Preparation Procedure … 1) Complete Sample Metadata form Sample metadata is collected via spreadsheet or … manager for alternate solutions. … The PI will receive an automated email once the samples are received and checked …
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Publication Policy
The JGI has a strong interest in seeing that the data produced by the facility result in scientific … and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts to do so, and JGI expects …
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Analyze Data
Chief Informatics Officer …
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Microbial Program
… inter-organismal interactions. These insights are crucial for addressing key environmental challenges, such as … with microeukaryotes. The program also studies giant viruses. Key research areas include terrestrial … available genomes from three domains of life. It provides tools for analyzing the functional capability of microbial …
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User Support
… work and outline roles and responsibilities resulting in a formal Statement of Work (SOW). All work performed at the … notified as projects reach specific milestones, either by automated emails or emails from your Project Manager. Your … through  JGI Genome Portals Coordinate data analysis tool tutorials, as needed Upon completion of all work …
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