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… DNA in natural environments, the Program provides a snapshot of microbial diversity and their metabolic functional … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and metabolomics data, shedding light on …

… this question in natural soil ecosystems by combining metagenomics with other omics approaches, including … Multiomics approaches such as metagenomics and metatranscriptomics provide invaluable … Clement Coclet (JGI Postdoc) Interns: Delphine Tripp (MIT, SCGSR Program) Tatiana Demina (University of Helsinki) Asier …

… with some of the latest developments in microbial genomics, metagenomics, and computational biology, and to empower them … Matt Escobar,  CSU San Marcos          "This was our first paper . It was definitely interesting going through the … all the rules and protocols that go along with submitting a paper. That was something that we have just never learned …

… viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and … oceanic fluids to hypersaline lakes and hyperthermal springs. This research provides insights into the limits of … , Volume 5 Issue 1. Wittmers, F. et al (2024) “ Non-photosynthetic lineages sibling to Cyanobacteria associate …

… from labeled nutrients into biomass. When paired with metagenomics, qSIP can decipher active microbial functions … Genome-resolved metagenomics … Harnessing high performance computation for metagenomics …

… to the California gold rush. And we’ll talk about a new JGI paper that’s just come out where I got the chance to do … womp. ALISON TAKEMURA: So, Dan, I heard that there is a big paper coming out, or maybe it’s just come out by the time … And that you got to do some genome mining for that paper. Could you tell me about the paper and what you did? …

… here is metabolomics. So this is a way to get a snapshot of all of the chemistry that a microbe produces. And … Mark, which is [something you’ve] published some great papers [on] recently – on evolution of biosynthetic gene … the system. [ Go here to learn more about Cameron Currie’s metagenomics research, enabled in part by JGI’s Community …

… podcast for you. A lot of this is based on a really great paper that came out in 2020 where this is all explained in … that to try to unmask chemical dark matter. And the idea behind this is that, if we acknowledge that a pathway is a … to natural product biosynthesis. So one of the key ideas behind EvoMining is that we exploited the actual knowledge …

… Oh, goodness. I mean, if you were to find my scientific papers, that would be Katherine. Dan Udwary: Right. Kate … together is really exciting. And why chemistry is so far behind in that stage is it’s still really difficult to do … and culture things under lab settings, we’re getting a snapshot in an artificial environment. And if we really want to …

… (2023) Unraveling the functional dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. … Giant virus diversity and host interactions through global metagenomics. Nature 578(7795):432-436 Sberro H, et al. … reveals a new bacterial candidate phylum in geothermal springs.  Nature Commun. 7:10476 Varghese NJ,  et al. …

… years of antiSMASH, we only made updates for every NAR paper that we wrote about, like, a new version of antiSMASH. … leapfrogging of data generation to data storage, now– well, behind the scenes, we had to cancel this two weeks ago, and … a group of experts – a little bit larger group of experts – behind it, then people are very happy to join. Alison …