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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … up-to-speed with some of the latest developments in microbial genomics, metagenomics, and computational biology, …
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Publication Policy
… ensure that all contributors to a research project are appropriately recognized and credited for their work, while also adhering to the authorship policies of the journal in which the … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to …
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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using genome-resolved … of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … diversity, leading to a better understanding of microbial communities and ecosystem function.  The Environmental …
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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis … cycling and inter-organismal interactions. These insights are crucial for addressing key environmental challenges, … The Microbial Program focuses on using advanced sequencing …
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New Lineages of Life Group
… bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to identify new divergent lineages and expand … Exploring the fascinating world of giant viruses, which challenge …
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Natural Prodcast Episode 15: Katherine Duncan
… this work. And we’ve isolated some rare actinomycetes from sediment cores in Antarctica that have– some of being … And sometimes, in terms of biological activities– like antimicrobial or something– sometimes a little difference is … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their … genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … activity across ecosystems.  By studying microbial communities and their interactions, the Program aims to …
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Community Science Program
… community at large with access to high-throughput sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . Through this program, the DOE aims to advance genome … synthesis, metabolomics and analysis will be performed by the JGI at no cost to the user. …
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Viral Genomics Group
… critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by … parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and … While an ever-increasing number of phage and virus genomes have been …
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Sediment microbial communities in Great Boiling Spring are controlled by temperature and distinct from water communities
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Natural Prodcast Episode 20: Brian Bachmann
… back to a new session of Natural Prodcast. I’ve got two things I wanted to tell you about in this introduction. First … caves, do you go after particular sources? Do you go after sediment? Do you go after– if there’s any water– or I guess, … of thought with that. So some people are interested in cave microbial– people are interested in the more extreme …
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Natural Prodcast Episode 23: Aaron Puri
… to predict or just understand better the language of microbial cell-cell communication. And he told us about his … like that. And let’s say it eventually ends up in the sediment, there’s no oxygen and that a lot of that carbon … community. For us, it’s these methane oxidizing bacterial communities that we like to look through as a lens, and …
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