Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1)

Published in:

Stand Genomic Sci 6(2) , 210-9 (May 25 2012)

Author(s):

Mavromatis, K., Chertkov, O., Lapidus, A., Nolan, M., Lucas, S., Tice, H., Del Rio, T. G., Cheng, J. F., Han, C., Tapia, R., Bruce, D., Goodwin, L. A., Pitluck, S., Huntemann, M., Liolios, K., Pagani, I., Ivanova, N., Mikhailova, N., Pati, A., Chen, A., Palaniappan, K., Land, M., Brambilla, E. M., Rohde, M., Spring, S., Goker, M., Detter, J. C., Bristow, J., Eisen, J. A., Markowitz, V., Hugenholtz, P., Kyrpides, N. C., Klenk, H. P., Woyke, T.

DOI:

10.4056/sigs.2816096

Abstract:

Saprospira grandis Gross 1911 is a member of the Saprospiraceae, a family in the class ‘Sphingobacteria’ that remains poorly characterized at the genomic level. The species is known for preying on other marine bacteria via ‘ixotrophy’. S. grandis strain Sa g1 was isolated from decaying crab carapace in France and was selected for genome sequencing because of its isolated location in the tree of life. Only one type strain genome has been published so far from the Saprospiraceae, while the sequence of strain Sa g1 represents the second genome to be published from a non-type strain of S. grandis. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 4,495,250 bp long Improved-High-Quality draft of the genome with its 3,536 protein-coding and 62 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

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