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Publication Policy
… The purpose of this policy is to establish communication norms around … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … upon request, and will include an indication of the level of contribution. The JGI suggests that users follow …
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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with … genome science, organisms, and ecosystems at the molecular level. Integrating genomics with metabolomics fuels the … terrestrial biogeochemical processes, development of high performance plants and microbes, and understanding …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… a science-y kid? JACLYN WINTER: I was not actually. So in high school, I didn’t– well, I guess– I mean, a few people I … when the snowpack melted went into the lake. And so the levels were decreasing at an alarming rate, but it has risen … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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New Lineages of Life Group
… Our research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … Exploring the fascinating world of giant viruses, which challenge our understanding of viral …
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High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lake
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Natural Prodcast Episode 13: Francisco Barona Goméz
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a … of these compounds, which, in turn, translate into a high chemical diversity. So that’s just the type of … the active site of an enzyme. So there is no promiscuity, generally speaking, in primary metabolism. Nevertheless, …
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Natural Prodcast Episode 12: Nadine Ziemert
… mining and the directions it might take in the future. I highly recommend it. I’ll link to it in the show notes. … But sometimes if you’re looking at it from a zoomed out level or a zoomed in level, you’ll see different things. … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … while nurturing a fresh cohort of users Reach the next generation of genome scientists and recruit new talent for … A primary purpose of this project is to bring educators from a broad range of …
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Publications
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Natural Prodcast Episode 23: Aaron Puri
… DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … and he has a project with the JGI to synthesize the genes for and explore the chemistry of quorum sensing … we’ll say methyl so we call them methylotrophs [ muh-thigh-luh-trophs ]. This is like, every square is a …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … you can basically usually predict, within a certain level of certainty, exactly what peptide is being produced … but in subtle ways that affect fitness. And so, doing a high level kind of analysis, you just might not be able to …
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Natural Prodcast Episode 15: Katherine Duncan
… I want to hear. Kate Duncan: They’re so exciting on so many levels. So first, I mean, all bacteria are everywhere. But … more economic, they also would like to extract some high– what they term “high value–“ Dan Udwary: Right. Kate … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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