Complete genome sequence of Acidaminococcus fermentans type strain (VR4)

Published in:

Stand Genomic Sci 3(1) , 1-14 ( 2010)

Author(s):

Chang, Y. J., Pukall, R., Saunders, E., Lapidus, A., Copeland, A., Nolan, M., Glavina Del Rio, T., Lucas, S., Chen, F., Tice, H., Cheng, J. F., Han, C., Detter, J. C., Bruce, D., Goodwin, L., Pitluck, S., Mikhailova, N., Liolios, K., Pati, A., Ivanova, N., Mavromatis, K., Chen, A., Palaniappan, K., Land, M., Hauser, L., Jeffries, C. D., Brettin, T., Rohde, M., Goker, M., Bristow, J., Eisen, J. A., Markowitz, V., Hugenholtz, P., Kyrpides, N. C., Klenk, H. P.

DOI:

10.4056/sigs.1002553

Abstract:

Acidaminococcus fermentans (Rogosa 1969) is the type species of the genus Acidaminococcus, and is of phylogenetic interest because of its isolated placement in a genomically little characterized region of the Firmicutes. A. fermentans is known for its habitation of the gastrointestinal tract and its ability to oxidize trans-aconitate. Its anaerobic fermentation of glutamate has been intensively studied and will now be complemented by the genomic basis. The strain described in this report is a nonsporulating, nonmotile, Gram-negative coccus, originally isolated from a pig alimentary tract. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of a member of the family Acidaminococcaceae, and the 2,329,769 bp long genome with its 2,101 protein-coding and 81 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

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