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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of … link in the evolution and transition of fungi from aquatic to terrestrial habitats. The work is part of the JGI’s 1000 … turned out to be a mixture of genetic material with various origins, ranging from fungi, plants to bacteria. Back in …
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DOE Metrics
FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** Actual Total Actual % Goal FY 2025 … the return-to-work plan in response to the pandemic.   FY 2019 Number of Unique Users There were 1,933 unique* JGI …
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Fungal & Algal Program
The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental … strains. This approach allows for the identification of key functional traits that have direct applications in …
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Microbial Program
… cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … interactions. These insights are crucial for addressing key environmental challenges, such as improving soil health, …
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Mission
JGI Mission As a U.S. Department of Energy Office of Science user facility supported by the … capabilities, large-scale data and professional expertise to support the global research community in studies of … processes that control the environmental fate of key elements with an impact on BER’s energy and …
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Microbiome Data Science Team
… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … discoveries and catalyzing a major transition of biology into data science.  Research in the Kyrpides group focuses on … (Nature Communications 2017, Science 2018, Molecular Cell 2019) and massive reconstruction of genomes from …
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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with … providing deeper insights into functional genomics. A key focus is understanding the interactions between  plants, …
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Secondary Metabolites Program
Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … for fundamental growth, provide critical advantages to the organisms producing them, and are often involved in … by bacteria, fungi, algae and plants. These compounds are key to organisms' interactions with their environments and …
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Plant Program
… user projects, the JGI’s Plant Program delves into the natural world’s potential to address global … The program is working to expand genomic resources for key plant species, enhancing our understanding of plant … to enable advanced methodologies for determining gene origin and function. These species are carefully selected by …
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Plant-Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are interested in how plants … genomics to better understand the plant-associated terrestrial world. Research Team    … Plant microbiomes hold …
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DNA Synthesis Program
The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, advancing the … modern descendants of ancestral genes are constructed at key phylogenetic nodes. These families allow easy access to …
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Environmental Genomics Group
… focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from … develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … Nov 9. doi: 10.1038/s41587-020-0718-6. Ladau, J. et al. (2019)  Spatial, Temporal, and Phylogenetic Scales of …
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