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Natural Prodcast Episode 18: A CSP Primer
… … DAN UDWARY: It’s been a while, but Natural Prodcast is back again for another round of episodes. … going to do. So, you probably know that “DOE” is the United States Department of Energy, which is a federal agency that … genome program. And I’m a scientist here. And have been for 18 years. (LAUGHS) DAN UDWARY: All right. Easy start. What …
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Natural Prodcast Episode 11: Marnix Medema
… to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural products and the … welcome back to Natural Prodcast, and this will be episode 11. This continues our little sprint on genome mining. In … our conversation with Marnix Medema , from Wageningen University in the Netherlands. Marnix is still pretty young, …
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Single Cell Research Group
AnimalBiome Asaf Levy: Assistant Professor, Hebrew University of Jerusalem , Israel Chris Rinke: Research … E., Kyrpides N. C., Henrissat B., Woyke T ., Ivanova N. N., Kelly W. J. Cultivation and sequencing of rumen microbiome … of microbial single-cell sequencing. Nat Methods 14(11): 1045-1054 (2017). Schulz F., Yutin N., Ivanova N. N., …
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University of California, Merced Internship Program
Originally conceived as a UC Merced graduate student summer research experience at the JGI, the Genomics Internship Program soon expanded to … see past projects? Read more below       …   Internship Snapshots   …
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DOE Metrics
… 190.304 109% 2,164 2,136 98.7% Q2 2025 175 152.100 87% 2,117 2,112 99.8% Q3 2025 175     2,140     Q4 2025 175     … 87.500 167.731 191% 2,140 2,184 102.1% Q4 2022 87.500 180.078 206% 2,164 2,208 102.0% *Includes Illumina and PacBio … the return-to-work plan in response to the pandemic.   FY 2019 Number of Unique Users There were 1,933 unique* JGI …
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Alabama Agricultural & Mechanical University Internship Program
… program between Alabama Agricultural & Mechanical University and the Joint Genome Institute. AAMU students … California honing their scientific skills and collaborating with their mentors and fellow interns. Inspired by the … past projects? Read more below         …   Internship Snapshots …
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River microbiomes from around the world: Kelly Wrighton
Kelly Wrighton and her group at Colorado State University in Fort Collins have a massive undertaking: …
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Microbiome Data Science Team
… (Nature Communications 2017, Science 2018, Molecular Cell 2019) and massive reconstruction of genomes from … the human gut microbiome. Nature Biotechnol.  39(1):105-114. Schulz F, et al. (2020) Giant virus diversity and host … of metagenomics software. Nature Methods  14(11):1063-1071 Bowers RM, et al. (2017) Minimum information about a …
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Workforce Development & Education Outreach
UC Merced have had a long-standing internship partnership that started in the summer of 2014. … Modeled on the JGI-UC … transitioning from high school to community college. … University of California, Merced … Alabama A&M University … CalTeach … Biotech Partners …
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How to Submit Sequencing Samples
… on accessing sample-level reports and tracking statuses.  Please follow the steps outlined below. Click the … form) All shipments originating outside the United States must also include a completed Export Certification … any materials classified above NIH Biosafety Level 2. 3) Review Shipping Instructions After receiving shipping …
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New Lineages of Life Group
Our research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes … metagenomics. Nature Reviews Microbiology volume 20, 721–736 JC Villada, F Schulz (2022) The endosymbiotic box of … binning of a giant virus. mSystems. 5 (3) Schulz et al. (2018) Hidden diversity of soil giant viruses. Nature …
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Natural Prodcast Episode 6: Marc Chevrette
Marc is a postdoc in Jo Handelsman’s group at the University of Wisconsin, where, among lots of other things, … out of date now. Yeah, so this is all over the United States in … I forget the number, but it’s over 42, 43 … approaches that Tiny Earth is using to be different than screening in the past, is in the types of pathogens or …
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