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Plant Program
With collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to … to regulate Earth's carbon balance, to exploring the genetic basis of how plants have naturally adapted to varied … in the DOE Bioenergy Research Centers. The  Plant Gene Atlas initiative develops gene expression catalogs across …
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Partnerships Development Team
… closely with the Berkeley Lab Intellectual Property Office to facilitate these new interactions.  The PDT enables … right, title, and interest to any intellectual property generated under the agreement. … CRADAs enable research … atmospheric gas mitigation properties of multiple rice plant growth promotion technologies using methanotrophs. … …
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DNA Synthesis Program
… central role in advancing functional genomics, focusing on developing genetic systems that can address global energy … decomposition, CO2 fixation, redox reactions, and plant metabolite biosynthesis, synthesizing and … Institute (JBEI), we are developing tools including ICE and DIVA to rapidly design combinatorial construct …
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Metabolomics Program
… metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With advanced mass … metabolomics with genomics data.  This is a web-based service returns a list of scored reaction and gene matches …
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Plant Program User Advisory Committee
The Plant Program Advisory Committee is chartered to offer advice, guidance and counsel on the effective management and strategic objectives of the plant program. The committee serves as the program's key …
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Plant-Microbial Interactions Group
Plants are complex organisms that harbor a fantastic … single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to better … We will eventually construct a bioenergy plant single-cell atlas comprising Sorghum, Switchgrass, and Brachypodium …
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Natural Prodcast Episode 9: Roger Linington
Science Foundation to create international partnerships in developing countries for research into various aspects of … Absolutely.  ROGER:  If I want to be provocative, I have noticed that many talks about biosynthesis start by saying … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …
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Natural Prodcast Episode 11: Marnix Medema
MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM database of biosynthetic gene cluster families. And he tells us about forthcoming … called “disease suppression”, where the microbiome of a plant, so the bacteria living on and inside the roots are …
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Workforce Development & Education Outreach
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Natural Prodcast Episode 17: Cassandra Quave
… curator there, with a broad range of experimental work on plants for drug discovery in antibiotics, anticancer, and … that’s how I got on that path of instead of wanting to practice medicine, I decided I want to discover and make … materials that you’re working on or the products you’re developing are being worked on or accessed under the …
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Natural Prodcast Episode 14: Nigel Mouncey
… vision for secondary metabolism, his past in industry in developing natural products for agriculture, and his … as well as the fermentation process itself. And we built a nice modeling feedback loop for the fermentation work, which … with a contract manufacturer to actually have them build a plant for production and fermentation and transfer that …
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A Plant Root Atlas for Tracking Developmental Trajectories
… of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley … the largest integration of single-cell datasets in plants and provides a foundation for still larger efforts in … Berkeley Lab  Biosciences Area has been leading efforts in developing and applying plant single-cell capabilities for …
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