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Metagenome Program
The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work encompasses bacteria, archaea, and … to assess microbial activity across ecosystems.  By studying microbial communities and their interactions, the …
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Sequencing Technologies
… molecular capabilities and state-of-the-art next-generation sequencing to enable biological discovery by the JGI and … They apply Lean Six Sigma practices to process optimization and development approaches, testing various platforms to see what works best for applications. The team works hand in hand with the Project Management …
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Metabolomics Technology Group
… the distributed and dynamic metabolite networks of environmental microbes and how they transform their environment. Research Team    … For further details, please reach …
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Single Cell Research Group
… genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic … ., Ivanova N. N., Kelly W. J. Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection.” … discovery of biomass-degrading genes and genomes from cow rumen. Science 331, 463-7 (2011). Newton I.L., Woyke T …
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for … specificity of single cells and genomes extracted from metagenomes, and also as a metric for quality control within … is a collaboration between the JGI and the Computational Biosciences Group at the Computing Sciences Research …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… and environmental challenges. Oh, the magical world of the cow stomach. Rumen – and its microbes – are really a powerhouse. Rumen … materials, rumen microbes and their enzymes are an optimal study subject that could lead to more sustainable energy …
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Micro-Scale Applications Group
The Micro-Scale Applications group explores the genetic makeup of natural microbial … out new approaches that utilize microfluidics/microdroplet technology in order to enhance the quality of single-cell genomes and directly link functional information with individual cells. Research Team    … …
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Partnerships Development Team
… in 2017, the PDT was established in part to help better-connect industry to JGI resources, as well as target … Leaf Symbiotics is partnering with the JGI and Berkeley Lab Biosciences Area to quantify atmospheric gas mitigation … Yasuo Yoshikuni and his JGI colleagues have developed a technology called chassis-independent recombinase-assisted …
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Mission
JGI Mission As a U.S. Department of Energy Office of Science user … National Laboratory ( Berkeley Lab ) and part of the Biosciences Area. Supported by the DOE Office of Science's … National Laboratory and the HudsonAlpha Institute for Biotechnology . We are located in the Integrative Genomics …
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Natural Prodcast Episode 12: Nadine Ziemert
… about natural products and the science and scientists of secondary metabolism. Welcome back. This will be episode 12 of … ALISON TAKEMURA: So Nadine, what got you interested in studying natural products? NADINE ZIEMERT: Like almost … that easily can identify secondary metabolite pathways in metagenomes, which is still hard to do. We are mining a lot …
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Natural Prodcast Episode 14: Nigel Mouncey
… … DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . … And these were not in natural products, these were in studying regulatory mechanisms of, first, E. coli and then … in an obvious way. NIGEL MOUNCEY: We did a little bit of metagenome screening work and did find related clusters. But …
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Microbial Program
The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis … to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those associated … capability of microbial communities based on their metagenome sequence, in the context of reference isolate …
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