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DOE JGI 5th Annual User Meeting announcement

Researchers from all over the world will be at the Marriott in Walnut Creek for the U.S. Department of Energy Joint Genome Institute 5th Annual Genomics of Energy and Environment Meeting, which will feature genomics research in the fields of clean energy generation and the environment. Keynote speeches will be delivered by Jay Keasling, CEO… [Read More]

Hydra genome project on GenomeWeb

In a paper appearing in the online version of Nature yesterday, an international research team led by investigators at US Department of Energy’s Joint Genome Institute, the J. Craig Venter Institute, the University of Heidelberg, and the University of California reported that they have sequenced the genome of the Hydra magnipapillata, a freshwater cnidarian. The… [Read More]

Naegleria genome project on SpaceDaily

“In a sense, analyzing the Naegleria genome shows us what it would be like to be on this planet more than a billion years ago, and what kind of organisms were around then and what they might have looked like,” said Simon E. Prochnik, a JGI and UC Berkeley bioinformaticist and coauthor of the Cell… [Read More]

B. braunii algal genome project on Physorg.com

But, a shortcoming of B. braunii is its relatively slow growth rate. While the algae that produce ‘vegetable-type’ oils may double their growth every six to 12 hours, B. braunii‘s doubling rate is about four days, he said. “Thus, getting large amounts of oil from B. braunii is more time consuming and thus more costly,”… [Read More]

B. braunii algal genome project on Checkbiotech.org

“Without understanding how the cellular machinery of a given algae works on the molecular level, it won’t be possible to improve characteristics such as oil production, faster growth rates or increased photosynthesis,” Devarenne said. Like most green algae, B. braunii is capable of producing great amounts of hydrocarbon oils in a very small land area…. [Read More]

B. braunii algae project on redOrbit

It’s not just a gee-whiz science trivia, Devarenne said. B. braunii is a prime candidate for biofuel production because some races of the green algae typically “accumulate hydrocarbons from to 30 percent to 40 percent of their dry weight, and are capable of obtaining hydrocarbon contents up to 86 percent of their dry weight. “As… [Read More]

Botrycoccus genome project on ScienceDaily

“Our results support the original Berkeley DNA sequence used for phylogenetic placement was from a contaminating algae,” Devarenne said. “And our study places the B race of B. braunii in the correct location on the ‘algal family tree’.” The actual genome sequencing and mapping will be performed by DOE’s Joint Genome Institute. Read more on… [Read More]

Hydra genome projcet on redOrbit

The Hydra genome was sequenced at the JCVI, and assembled independently by the JCVI and JGI. The genome is approximately one billion base pairs in size and contains approximately 20,000 protein coding genes. The team found clear evidence for conserved genome structure between the Hydra and other animals, like humans. This contrasts with organisms like… [Read More]

Hydra genome project in PRNewswire

Researchers from the J. Craig Venter Institute, along with more than 70 other researchers from around the world, have sequenced and analyzed the genome of Hydra magnipapillata, a fresh water member of the cnidaria —  stinging animals that include jellyfish, sea anemones and corals. The research, published in the March 14 edition of Nature, was… [Read More]

Gene prediction algorithm PRODIGAL

With our years of experience in manually curating genomes for the Joint Genome Institute, we developed a new gene prediction algorithm called Prodigal (PROkaryotic DYnamic programming Gene-finding ALgorithm). With Prodigal, we focused specifically on the three goals of improved gene structure prediction, improved translation initiation site recognition, and reduced false positives. We compared the results… [Read More]