DOE Joint Genome Institute

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Program Meetings and Workshops

Fungal Genomics Program

2014

  1. Mycorrhizal genomics workshop, March 27, 2014, Seville,Spain
  2. JGI Orientation session at the European Fungal Genetics Conference, March 26, 2014, Seville,Spain
  3. Fungal Genomics workshop in conjunction with JGI User Meeting, March 18, 2014, Walnut Creek, CA
  4. Penicillium jamboree, March 17, 2014, Walnut Creek, CA
  5. MGM workshop at JGI, Feb/Mar/Sep 2014, Walnut Creek, CA
  6. MycoCosm workshop @ MSA-APS Joint Meeting, August 10, 2013 , Austin, TX, USA
  7. Mycorrhizal genomics workshop, July 9-10, 2013, Leipzig,Germany
  8. JGI workshop @ Fungal Genetics Meeting in Asilomar, March 14, 2013 , Pacific Grove, CA
  9. Dothideomycetes workshop @ Fungal Genetics Meeting in Asilomar, March 12, 2013 , Pacific Grove, CA
  10. Mycorrnizal genomics workshop, November 13-14, 2012 , INRA-Nancy, France
  11. Fungal jamboree & MycoCosm Tutorial conjunction with JGI User Meeting, Mar 19-23, 2012 , Walnut Creek, CA
  12. CSP 2012 PI Workshop, January 23-24, 2012 Walnut Creek, CA

2013

  1. MycoCosm workshop @ MSA-APS Joint Meeting, August 10-14, 2013, Austin, TX, USA

  2. Mycorrhizal genomics workshop, July 9-10, 2013, Leipzig,Germany

  3. JGI User Meeting, March 26-28, 2013, Walnut Creek, CA, USA

  4. Fungal Genetics Meeting in Asilomar, March 12-17, 2013, Pacific Grove, CA, USA

    1. Workshops and satellite meetings of the Fungal Genetics Meeting in Asilomar, March 14, 2013 , Pacific Grove, CA

    2. JGI workshop @ FGC, March 14, 2013 , Pacific Grove, CA

  5. Dothideomycetes workshop @ FGC, March 12, 2013, Pacific Grove, CA

  6. MGM workshop at JGI, Feb 4-8, Walnut Creek, CA

  7. MycoCosm workshop @ APS-MSA Joint Meeting, , Austin, TX, USA

  8. Plant and Animal Genomics Meeting, January 12-16, 2013, San Diego, CA, USA

2012

  1. Bridging Mycorrhizal Genomics, Metagenomics& Forest Ecology, November 15-16, 2012 , INRA-Nancy, France

  2. Mycorrhizal genomics workshop, November 13-14, 2012 , INRA-Nancy, France

  3. ECFG satellites

    • March 29, 2012: Asperfest, a satellite of ECFG

    • March 30, 2012: Fuzarium satellite meeting to ECFG

    • April 3, 2012: Dothideomycetes satellite meeting to ECFG

    • April 3, 2012: Neurospora satellite meeting to ECFG

  4. Fungal jamboree & MycoCosm Tutorial at JGI User Meeting, Mar 19-23, 2012 , Walnut Creek, CA

  5. CSP 2012 PI Workshop, January 23-24, Walnut Creek, CA

  6. Annual meeting of the Mycological Society of America, July 15-18, 2012, New Haven, CT

  7. Gordon Conference on Cellular & Molecular Fungal Biology, June 17-22, 2012, 2012, Holderness, NH

  8. MGM workshop at JGI, May 14-18, Walnut Creek, CA

  9. Biocuration 2012, Apr 2-4 2012, 2012, Washington, DC

  10. 11th European Conference on Fungal Genetics (ECFG), Mar 30-Apr 2, 2012 , Marburg, Germany

  11. JGI User Meeting, Mar 19-23, 2012 , Walnut Creek, CA

  12. PAG, January 14-18, 2012 , San Diego, CA

2011

  1. Mycorrhizal genomics workshop, September 28-29, 2011, INRA-Nancy, France

  2. B.natans-G.theta jamboree, September 7-9, 2011, JGI, Walnut Creek, CA

Information for attendees

  1. JGI fungal workshop at Annual Meeting of the Mycological Society of America, August 2-5, 2011 Fairbanks, AL

Information for attendees

  1. Oomycetes workshop, June 29-July1, 2011 Blackburg, VA

Information for attendees

  1. Mycocosm Workshop, March 22, 2011, Walnut Creek, CA

Information for attendees

  1. Basidiomycetes Jamboree, March 21, 2011, Walnut Creek, CA

  2. Dothideomycetes Jamboree, March 14, 2011, Pacific Grove, CA

  3. Annual Meeting of the Mycological Society of America, August 2 – 5, 2011, Fairbanks, AL

  4. JGI User Meeting, March 22-24, 2011, Walnut Creek, CA

  5. Fungal Genetics Conference at Asilomar, March 15-20, 2011, Pacific Grove, CA

2010

  1. Dothideomycetes Comparative Genomics workshop, March 29, 2010, The Netherlands, in conjunction with the European Conference on Fungal Genetics

Information for attendees

  1. Basidiomycetes Comparative Genomics jamboree, Mar 22-23, 2010, Walnut Creek, California, in conjunction with the JGI User Meeting.

Information for attendees

  1. JGI Annotation workshop, March 24, 2010, Walnut Creek, California, in conjunction with the JGI User Meeting.

  2. IMC9: The Biology of Fungi, August 1-6, 2010 Edinburgh, UK

  3. 5th annual Sequencing, Finishing and Analysis in the Future meeting, June 2-4, 2010, Santa Fe, NM

  4. JGI User Meeting, March 24-26, 2010, Walnut Creek, CA

  5. Neurospora meeting, April 8-10, 2010, Asilomar, CA

2009

  1. Comparative Genomics of Thermophilic Fungi jamboree, Dec 4-7, 2009, Walnut Creek, California

  2. Information for attendees

  3. Heterobasidion jamboree, May 13-14, 2009, Uppsala, Sweden

  4. Information for attendees

  5. JGI Annotation workshop, March 25, 2009, Walnut Creek, California, in conjunction with the JGI User Meeting.

  6. Heterobasidion meeting, March 22, 2009, Pacific Grove, California, in conjunction with the Asilomar Fungal Genetics Conference

  7. Zygomycetes workshop, March 21, 2009, Pacific Grove, California, in conjunction with the Asilomar Fungal Genetics Conference

  8. Cryphonectria workshop, March 20, 2009, Pacific Grove, California, in conjunction with the Asilomar Fungal Genetics Conference

  9. Workshop JGI Genome Portal and Community Annotation Tools, March 19, 2009, Pacific Grove, California, in conjunction with the Asilomar Fungal Genetics Conference

  10. Phycomyces workshop, March 18, 2009, Pacific Grove, California, in conjunction with the Asilomar Fungal Genetics Conference

  11. Information for attendees

  12. Dothideomycetes jamboree, March 17, 2009 and Dothideomycetes session March 21, 2009, Pacific Grove, California, in conjunction with the Asilomar Fungal Genetics Conference

  13. A review of the Dothidiomycete session was published in New Phytologist

  14. European Conference on Fungal Genetics, March 29-31, 2010, Leeuwenhorst, The Netherlands

  15. JGI User Meeting, March 25-27, 2009, Walnut Creek, CA

  16. Asilomar Fungal Genetics Conference, March 17-22, 2009, Pacific Grove, CA

2008

  1. Heterobasidion jamborees, Dec 2-3 2008 and Feb 11-13, 2009, Uppsala, Sweden

  2. Dothideomycetes Jamboree, November 10-12 2008, Walnut Creek, CA Information for attendees

  3. Sporobolomyces roseus Jamboree, April 26, 2008, Walnut Creek, CA (UC Merced students)

  4. JGI Annotation workshop, March 26 2008, Walnut Creek, California, in conjunction with the JGI User Meeting

  5. JGI User Meeting(ecfg10.info), March, 26-28 2008, Walnut Creek, CA

  6. European Conference on Fungal Genetics, April 5-9, 2008, Edinburgh, Scotland

2007

  1. JGI Annotation workshop, March 28 2007, Walnut Creek, California, in conjunction with the JGI User Meeting

  2. Heterobasidion Jamboree, March 23 2007, Pacific Grove, California, in conjunction with the Asilomar Fungal Genetics Conference

  3. Dothideomycetes jamboree, March 22 2007, Pacific Grove, California, in conjunction with the Asilomar Fungal Genetics Conference

  4. Nectria haematococca Jamboree, March 22 2007, Pacific Grove, California, in conjunction with the Asilomar Fungal Genetics Conference

  5. Phycomyces Jamboree, March 21, 2007, Pacific Grove, California, in conjunction with the Asilomar Fungal Genetics Conference

  6. Phytophthora capsici Jamboree, March 20, 2007, Pacific Grove, California, in conjunction with the Oomycete Molecular Genetics Network meeting and the Asilomar Fungal Genetics Conference

  7. Postia placenta Jamboree, March 18-19, 2007, Pacific Grove, California, in conjunction with the Asilomar Fungal Genetics Conference

2006

  1. Mycosphaerella graminicola Jamboree, June 7-9, 2006

  1. Aspergillus niger jamboree, June 7-9, 2006

  1. Laccaria bicolor Jamboree, April 4-5, 2006 (organized by INRA, Nancy, France)

Published in Nature, 2008 Mar 6;452(7183):42-3

2005

  1. Trichoderma reesei jamboree, November 7-8, 2005 (on-line jamboree using Access Grid Technology)

  2. Trichoderma reesei jamboree, March 20-23, 2005, Pacific Grove, California, in conjunction with the Asilomar Fungal Genetics Conference

2004

  1. Phytophthora sojae and P. ramorum Jamboree (sources of soybean “damping off” disease and sudden oak death), August, 2004

Published in Science, 2006 Sep 1;313(5791):1261-6.

2001

  1. Phanerochaete chrysosporium (White Rot Fungus) jamboreeSummer 2001

Published in Nat Biotechnol ,2004 Jun;22(6):695-700.

Microbial Genomes Program

2012

  1. Microbial Genomics & Metagenomics Workshops, September 10 – 14, Walnut Creek, CA

  2. Microbial Genomics & Metagenomics Workshops, July 9-13, Valencia, Spain. This workshop is part of the CSISP summer school. Instructors & Agenda.

  3. CSP 2012 PI Workshop, January 23-24, Walnut Creek, CA

  4. Microbial Genome Reannotation Workshop, January 19-20, Walnut Creek, CA

2011

  1. Microbial Genomics and Metagenomics Workshop , September 26-30, Walnut Creek, CA

  2. JGI’s Microbial Genomics and Metagenomics Workshop , May 9-13, Walnut Creek, CA

  3. IMG workshops at the 6th JGI user meeting, March 21-22, Walnut Creek, CA

  4. JGI’s Microbial Genomics and Metagenomics Workshop , February 14-18, Walnut Creek, CA

  5. Yellowstone National Park metagenome workshop, January 14-16, Jackson Hole, WY

  6. International Union of Microbiological Socieaties (IUMS) 2011 Congress, September 6-10,Sapporo, Japan

  7. 4th Congress of Eurpoean Microbiologists FEMS 2011, June 26-30, Genova Switzerland

  8. Sequencing, Finishing and Analysis in the Future meeting, June 1-3, Santa Fe, NM

2010

  1. Microbial Genomics and Metagenomics Workshop, September 20-24, Walnut Creek, CA

  2. MBL Microbial Diversity Course, June 25-30, Woods Hole, MA

  3. 10th Cyanobacterial Molecular Biology Workshop, June 11-15, Lake Arrowhead, CA

  4. Critical Assessment of Functional Annotations Experiment (CAFAE), May 18-19, Arlington, VA

  5. NCBI Genome Annotation Workshop, April 26-27, Rockville, MD

  6. IGS Genomics Training Workshop, April 21-23, Baltimore, M

  7.  18th Annual International Meeting on Microbial Genomics, September 12-16, Lake Arrowhead, CA

  8. 13th International Society for Microbial Ecology Conference, August 22-27, Seattle, WA

  9. Sequencing, Finishing and Analysis in the Future meeting, May 27-29, Santa Fe, NM

  10. 9th Genomics Standards Consortium meeting (GSC-9), April 28-30, Rockville, MD

  11. 11th Advances in Genome Biology and Technology (AGBT) meeting, February 24-27, Marco Island, FL

  12. GSC´s M3 workshop at PSB 2010, January 4-8, HI

2009

  1. Microbial Genomics and Metagenomics Workshop, September 14-18, Walnut Creek, CA

  2. Microbial Genomics and Metagenomics Workshop, June 1-5, Walnut Creek, CA

  3. International Data Release Workshop, May 12-13, Toronto, Canada

  4. Microbial Genomics and Metagenomics Workshop, February 2-6, Walnut Creek, CA

  5. Microbial Genome Annotation, Analysis and Comparative Study Workshop, 109th ASM General Meeting, May 17 -21, Philadelphia, PA

  6. 7th International Conference on Bioinformatics, November 12-14, Atlanta, GA

  7. Frankia Jamboree, July 27-28, Walnut Creek, CA

  8. US-China Bioenergy Forum, October 23-25, Beijing, China

  9. International Symposium on Designing the Microbial Research Commons, October 8-9, Washington, DC

  10. 8th Genomics Standards Consortium meeting (GSC-8), September 9-11, Walnut Creek, CA

  11. Gordon Research Conference (Applied and Environmental Microbiology), July 12-17, South Hadley, MA

  12. FEMS-2009, June 29 – July 2, Göteborg, Sweden

  13. HMP Research Network meeting, June 9-10, Gaithersburg, MD

  14. Sequencing, Finishing and Analysis in the Future meeting, June 2-4, Santa Fe, NM

  15. MSK’s 50th International Symposium on Microbiology, May 28-30, Jeju Island, Korea

  16. 109th General ASM Meeting, May 17-21, Philadelphia, PA

 

2008

  1. MGM Workshop, October 8-10, San Juan, Puerto Rico

  2. Microbial Genomics and Metagenomics Workshop, September 15-19, Walnut Creek, CA

  3. Workshop on “Comparative Genomics of Arthrobacter and GC rich gram positive bacteria”,June 25-28, Jouy en Josas, France

  4. Bioinformatics Primer for Coral Researchers,27-30, US Fish & Wildlife´s National Conservation Training Center, Shepherdstown, WV

  5. Microbial Genomics and Metagenomics Workshop, May 19-23, Walnut Creek, CA

  6. International bioinformatics ‘annotation jamboree’, April 13-18, Jerusalem, Israel

  7. Microbial Genomics and Metagenomics Workshop, January 7-11, Walnut Creek, CA

  8. Workshop on “Oral Pathogen Sequence Analysis and Comparative Study”, 37th Annual Meeting & Exhibition of the AADR, April 2-5, Dallas, TX

  9. 12th International Society for Microbial Ecology Conference, August 17-22, Cairns, Australia

  10. FEBS-2008 Biochemistry of Cell Regulation, June 28-July 3, Athens Greece

  11. Finishing in the Future 2008, JMay 28-30, Santa Fe, NM

  12. 7th Annual Mark Wilson Conference, 18th Annual Meeting of the OIMRG, January 25-28, Cancun, Mexico

Metagenome Program

2012

  1. Microbial Genomics & Metagenomics Workshops, September 10 – 14, Walnut Creek, CA

  2. Microbial Genomics & Metagenomics Workshops, July 9-13, Valencia, Spain. This workshop is part of the CSISP summer school. Instructors & Agenda.

  3. CSP 2012 PI Workshop, January 23-24, Walnut Creek, CA

2011

  1. Ten Thousand Genomes at a Time: Metagenome Assembly and Beyond, October 12-13, Walnut Creek, CA

  2. Microbial Genomics and Metagenomics at the JGI, September 26-30, Walnut Creek, CA

  3. Microbial Genomics and Metagenomics at the JGI, May 9-13, Walnut Creek, CA

  4. Microbial Genomics and Metagenomics at the JGI, February 7-11, Walnut Creek, CA

  5. Human Microbiome Conference, March 10-12, Vancouver, Canada

2010

  1. 2nd Annual Argonne Soils metagenomics workshop, October 6-8, Chicago, IL,

  2. Microbial Genomics and Metagenomics at the JGI, September 20-24, Walnut Creek, CA

  3. Computational Methods and Terabase Metagenomics, July 17-24, Snowbird, Utah

  4. Indoor environment metagenomics, June 14-15, Chicago IL

  5. Ocean genomics and metagenomics, June 7-11, Honolulu, HI

  6. 1st MetaHIT Conference on Human Metagenomics, March 1-3, Shenzhen, China

  7. Human Microbiome Research Conference, Aug 31- Sep 2, Saint Louis

2009

Workshops

  1. Microbial Genomics and Metagenomics at the JGI, September 14-18, Walnut Creek, CA

  2. Rhizosphere Grand challenge workshop at the JGI, August 28, Walnut Creek, CA

  3. Soil grand challenge workshop at the JGI, July 20, Walnut Creek, CA

  4. Microbial Genomics and Metagenomics at the JGI, June 1-5, Walnut Creek, CA

  5. Microbial Genomics and Metagenomics at the JGI, February 2-6, Walnut Creek, CA

    13th Annual Int Conference on Research in Computational Molecular Biology (RECOMB), May 18-21, Tucson, Arizona

Jamborees

  1. Poplar biomass degrading community jamboree, September 23-25, Walnut Creek, CA

  2. Yellowstone metagenome jamboree , March 24-25, Walnut Creek, CA

2008

  1. Microbial Genomics and Metagenomics at the JGI, September 15-19, Walnut Creek, CA

  2. Microbial Genomics and Metagenomics at the JGI, May 19-23, Walnut Creek, CA

  3. Microbial Genomics and Metagenomics at the JGI, January 7-11, Walnut Creek, CA

  4. HMP Community Outreach Meeting, March 27, Bethesda, Maryland

  5. 12th International Symposium on Microbial Ecology (ISME 12), August 17-22, Cairns, Australia

  6. Seventh European Conference on Computational Biology, 22-26 September, Cagliari, Italy

  7. International Conference on Metagenomics, Nov 3-7 2008, University of California San Diego

2007

  1. International Conference on Metagenomics, July 11-13, University of California San Diego

  2. International Human Microbiome Consortium Meeting, December 9-10, Rockville, Maryland

2006

  1. 11th International Symposium on Microbial Ecology (ISME 11), August 20-25, Vienna, Austria

  2. International Conference on Metagenomics, October 3-5, University of California San Diego

Plant Program

2011

  1. Phytozome Workshop, March 22, 2011, Walnut Creek, CA

2010

  1. Phytozome Workshop, March 24, 2010, Walnut Creek, CA