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Publication Policy
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any other … with a list of JGI staff who contributed to their project, using the CRediT taxonomy ( credit.niso.org/ , with …
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Data Policy
… Data produced and released by the US Department of Energy … Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and information sharing. We also recognize the need to … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to … and characterizing microbial diversity, work in the Metagenome Program uses several experimental approaches to … The Metagenome Program focuses on the high-throughput sequencing … Program combines large-scale, time-series metagenomic data with detailed characterization of model systems to …
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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … applications. By recovering population genomes from metagenomes, we gain insights into microbial interactions, …
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Microbiome Data Science Team
… technologies.  The exponential growth of DNA sequencing data, coupled with recent computational technology advances … in management, processing and visualization of “big data,” and artificial Intelligent/machine learning approaches in data analysis and interpretation is creating new …
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Data Ecosystem
… offer new capabilities and resources to users through a BER data ecosystem.  A data ecosystem is a connected resource where data from … institutions like the JGI, KBase, NCBI, NMDC, EMSL and the Protein Data Bank enables predictive ecosystem biology. The … the JGI has unique access to both expertise and infrastructure to facilitate these efforts. Particular areas of …
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Industry Engagement Program
… ensure U.S. energy dominance by integrating supercomputers, datasets and AI agents to solve key national challenges. The … the JGI has a key role to play in providing high-quality, structured and curated data to support AI applications. In … from diverse biological and environmental samples by using advanced computer analysis coupled with liquid …
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Sequencing Technologies & Products
… through end-to-end automation — and further advancing sequence applications, single cell genomics, DNA synthesis, … [QA/QC]), large-scale liquid handling automation, and sequence analysis. … access to cutting-edge cell sorting, DNA amplification, and sequence analysis to recover the genomes of uncultivated …
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New Lineages of Life Group
… and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, … to find novel functions that may impact microbiome structure and biogeochemical cycles. Research Team    … to extract insights from large-scale biological datasets: Our group develops and applies artificial …
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Natural Prodcast Episode 12: Nadine Ziemert
… So he could see really into this– so he could look into the structure, really seeing that. And I’m always just looking … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all that stuff. And … science of examining DNA sequence to try and predict the structures of secondary metabolites and to understand their …
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Joint Genome … builds upon thousands of microbial genomes that have been sequenced by the JGI though not formally analyzed or …
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Products
… sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is complete. … Fungal Standard Draft Whole genome shotgun sequencing using long-read sequencing. Exact library types and quality …
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