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New Lineages of Life Group
… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … and machine learning to identify new divergent lineages and expand the Tree of Life. We then investigate the coding potential to find … which challenge our understanding of viral complexity and evolution Our research focuses on discovering and …
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Publication Policy
… The purpose of this policy is to establish communication norms around … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … Science Program lead(s) to discuss authorship at any point. Specifically, Users are encouraged to discuss authorship …
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Publications
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is … While uncovering the metabolic potential of uncultivated lineages is of high value to establish models and …
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … while nurturing a fresh cohort of users Reach the next generation of genome scientists and recruit new talent for … A primary purpose of this project is to bring educators from a broad range of …
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Microbial Program
… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … associated with microeukaryotes, enhances our understanding of terrestrial biogeochemical cycling and inter-organismal … genome sequencing of underexplored bacterial and archaeal lineages that are important for bioeconomy applications. By …
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … and Appendix. An Appendix identifies the type of work or specific proposal to be covered under the Agreement. The … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… bright guy who’s been thinking for a long time about the evolution and natural products systems. This conversation … are shaping each part of the metabolic network in each specific organism. Really, what matters is the forces that … talk about conserve between or within a particular genomic lineage. So there is no doubt that if you look into all the …
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Natural Prodcast Episode 23: Aaron Puri
… DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … for and explore the chemistry of quorum sensing systems, specifically the acyl homoserine lactones.  If you listened … So that’s– so that could be an example of convergent evolution, but just speculating there. But it’s interesting …
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Metagenome Program
… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … along with their associated viruses and mobile genetic elements. Beyond exploring and characterizing … drive innovations that could advance our understanding of Earth’s ecosystems. …
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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the … metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables exploration of energy …
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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … coding genes that are signatures for the presence of a specific type of biosynthetic gene cluster. And antiSMASH … in more detail. Especially if you want to look at the evolution of these gene clusters, for example, you really …
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