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… program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … biological insights from sequence data, employing IMG data and tools for comparative analysis, visualization …

… computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … to a better understanding of microbial communities and ecosystem function.  The Environmental Genomics group also …

… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of … drives sustainable solutions in energy, agriculture and ecosystem management. … The Microbial Program focuses on using advanced sequencing …

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts … synthesized, and any other contributions, such as assembly, analysis, annotation, verification, creation of genome …

… Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … approaches to assess microbial activity across ecosystems.  By studying microbial communities and their …

… when it’s, well, when the code is good enough, it can be integrated into the code base. And at the moment, we have … of biosynthetic gene clusters. But with all of the other IMG kind of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial …

… discovering and characterizing giant viruses, which possess genomes and particle sizes that rival those of cellular … between microbes and eukaryotes and their impact on ecosystem function: We investigate the intricate networks of … hosts. Our work reveals how these interactions shape ecosystem function, genomic innovation and environmental …

… will be reused for further science.  Notice Effective July 27, 2026, the JGI will move to a new login service, requiring the … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to … The IMG/M system serves as a community resource for comparative …

… artificial Intelligent/machine learning approaches in data analysis and interpretation is creating new opportunities … the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. The Research Team   … 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science …

… cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products … submit raw sequence data to  SRA at NCBI once the standard analysis is complete. Raw metabolomics data is submitted to … Program leads to discuss available options. Note: In 2021, we conducted an extensive internal product audit to …

… works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular level. Integrating genomics with … exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With …