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Plant Program
… collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global … to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … a plant based bioeconomy where plants are a major source of chemical production and contribute to a healthier planet …
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Publication Policy
… The purpose of this policy is to establish communication norms around … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … acknowledgment (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, …
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New Lineages of Life Group
… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … Exploring the fascinating world of giant viruses, which challenge our understanding of viral …
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Fine Mapping of the Bsr1 Barley Stripe Mosaic Virus Resistance Gene in the Model Grass Brachypodium distachyon
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Natural Prodcast Episode 6: Marc Chevrette
… DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … and offer protection through chemistry. We’ve done really fine-scale sampling in my research and some of the research … have steered me in that direction a little bit more. Toward mosaic theory. MARC: So how quick, and how much geography …
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Plant Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are … single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to better …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … in, garbage out. So if we’re just using predictions to refine our predictions, we’re not really going to get …
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Publications
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in … and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … advances in management, processing and visualization of “big data,” and artificial Intelligent/machine learning …
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … while nurturing a fresh cohort of users Reach the next generation of genome scientists and recruit new talent for … A primary purpose of this project is to bring educators from a broad range of …
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Metagenome Program
… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. Beyond exploring and characterizing … Program focuses on the high-throughput sequencing of microbial communities to uncover the complex interactions …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… The Joint Genome Institute and the Molecular Foundry have launched … for researchers to request the capabilities and expertise of both national user facilities in one research proposal.  … challenges in the sourcing, recovery, and utilization of critical minerals and materials. The proposal submission …
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