Search

… The purpose of this policy is to establish communication norms around … recognized and credited for their work, while also adhering to the authorship policies of the journal in which the … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Joint Genome … A primary purpose of this project is to bring educators from a broad range of disciplines up-to-speed … the annotation, comparative analysis, and distribution of prokaryotic microbial genome and microbiome datasets. It …

… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … to identify new divergent lineages and expand the Tree of Life. We then investigate the coding potential to find …

… When submitting sequences to the JGI DNA Synthesis program, please include the following items: … There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an open source … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …

… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … within the focused topic areas that can be completed on an accelerated timeline as compared with the standard CSP … provides customized analysis, the JGI also participates in publication of results. …

…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. This … An assay used for profiling transcription factor binding sites across entire … The JGI uniquely offers quantitative Stable Isotope Probing (SIP) …

… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … drive innovations that could advance our understanding of Earth’s ecosystems. … and virus-microbe interactions, over ecological and evolutionary time scales.The Metagenome Program combines …

… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … do some sort of slightly novel chemistry. That’s just how evolution works. So if secondary metabolism is really …

… The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the biological …

… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … And I found her review in natural product reports on the evolution of genome mining and microbes with Mohammad … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …

… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports and … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting …