Statistics

FY 2013 Number of Unique Users

There were 1,155 unique* DOE JGI users in FY2013, which includes Principal Investigators (PIs), Co-PIs, collaborators, and Eukaryotic annotators.

*Unique users are counted once, even though an individual may have several projects/roles.

FY 2014 Overall Sequencing Progress, Updated Quarterly

Quarter Total Bases (Billions) Operating Hours
Goal Actual Total* Actual % of Goal Goal (hours)** Actual Total Actual % Goal
Q1 2014 15,000  18.827  126% 2,164  2208  102%
Q2 2014 17,000  19.149  113% 2,117  2160  102%
Q3 2014 18,000 2,140
Q4 2014 18,000 2,164
FY 2014 Total 68,000  37.976  56% 8,585  4368  51%

* Includes Illumina HiSeq, MiSeq and PacBio sequencing platforms.
** Operating Hour target is based on 98% of the total available hours.

FY 2013 Overall Sequencing Progress, Updated Quarterly

Quarter Total Bases (Billions) Operating Hours
Goal Actual Total* Actual % of Goal Goal (hours)** Actual Total Actual % Goal
Q1 2013 15,000 20,004 133% 2,164 2,208 102%
Q2 2013 15,000 18,882 126% 2,117 2,160 102%
Q3 2013 18,000 13,904 77% 2,140 2,184 102%
Q4 2013 18,000 18,073 100% 2,164 2,208 102%
FY 2013 Total 66,000 70,863 107% 8,585 8,760 102%

* Includes Illumina HiSeq, MiSeq and PacBio sequencing platforms.
** Operating Hour target is based on 98% of the total available hours.

FY 2012 Overall Sequencing Progress, Updated Quarterly

Quarter Total Bases (Billions) Operating Hours
Goal Actual Total Actual % of Goal Goal (hours)* Actual Total Actual % Goal
Q1 2012 10,000 12,923 129% 2,164 2,208 102%
Q2 2012 7,000 17,280 247% 1,848 2,184 118%
Q3 2012 13,755 15,099 110% 2,140 1,944 91%
Q4 2012 14,100 10,813 77% 2,164 2,208 102%
FY 2012 Total 44,855 56,115 125% 8,316 8,544 103%

* Operating Hour target is based on 98% of the total available hours. Reduced operating hour target in Q2 is due to planned upgrade of the Laboratory Information Management System (LIMS) and temporary shut down of the sequencing production line to accommodate data migration requirements. Q3 actual Operating Hours reflect a delay in implementation of the LIMS from Q2 to Q3. As a result of the delay in the LIMS implementation, the Q4 base total is below target.

FY 2011 Summary

Quarter Total Bases (Billions) Total Bases (Billions) by Platform Operating Hours*
Goal Actual Total Actual % of Goal 454 Illumina Goal (hours) Actual Total Actual % Goal
Q1 2011 1,500 3,233.30 216 73.27 3,160.03 2100 2208 105
Q2 2011 3,000 4,999.74 167 43.14 4,956.60 2100 2160 103
Q3 2011 5,000 7,893.75 158 6.38 7,887.37 2100 2184 104
Q4 2011 5,500 13,776.21 250 5.99 13,770.22 2100 2208 105
FY 2011 Total 15,000 29,903.00 199 128.78 29,774.22 8400 8760 104

* Number of hours a week that sequencing machines are available to produce data.

FY 2010 Summary

Quarter Total Bases (Billions) Total Bases (Billions) by Platform Operating Hours**
Goal Actual Total Actual % of Goal Sanger* 454 Illumina Goal Actual Total Actual % Goal
Q1 2010 275 640.365 233 1.223 45.865 593.278 2,100 2160 103
Q2 2010 275 1,784.271 649 0.735 81.792 1,701.744 2,100 2160 103
Q3 2010 275 1,609.752 585 0.974 108.558 1,500.22 2,100 2184 104
Q4 2010 275 2,006.41 730 1.196 124.393 1,880.818 2,100 2208 105
FY 2010 Total 1,100 6,040.796 549 4.128 360.608 5,676.060 8,400 8712 104

* Q20 bases — indicates good confidence in the assignment of a base.
** Number of hours a week that sequencing machines are producing data.

FY 2009 Summary

Quarter Total Bases (Billions) Total Bases (Billions) by Platform Operating Hours**
Goal Actual Total Actual % of Goal Sanger* 454 Illumina Goal Actual Total Actual % Goal
Q1 2009 39.9 124.21 311 6.02 23.01 95.18 2100 2088 99.4
Q2 2009 60.1 196.829 328 5.849 38.48 152.5 2100 2146 102
Q3 2009 71.2 236.566 332 5.251 63.127 168.188 2100 2184 104
Q4 2009 81.8 446.278 546 3.452 45.96 396.866 2100 2208 105
FY 2009 Total 253 1003.887 397 20.58 170.58 812.73 8400 8626 103

* Q20 bases — indicates good confidence in the assignment of a base.
** Number of hours a week that sequencing machines are producing data.

FY 2008 Summary

Quarter Total Bases (Billions) Total Bases (Billions) by Platform Operating Hours**
Goal Actual Total Actual % of Goal Sanger* 454 Illumina Goal Actual Total Actual % Goal
Q1 2008 9.8 7.2 73.40 4 3.2 - 2100 1512 72
Q2 2008 10 9.2 91.19 2.3 6.9 - 2100 1800 85.7
Q3 2008 11 41.17 374.27 5.99 8.28 26.9 2100 2184 104
Q4 2008 12 67.94 566.17 8.04 22.8 37.1 2100 2208 105
FY 2008 Total 42.8 125.51 293 20.3 41.17 64 8400 7704 92

* Q20 bases — indicates good confidence in the assignment of a base.
** Number of hours a week that sequencing machines are producing data.

FY05-07 Sequencing Goals and Results

Fiscal Year Sequence (GB) Operating Hours
Targets Actual* Targets Actual
2007 40 39.22 8400 8609
2006 30 32.74 8400 8734
2005 28 33.63 8400 8760

* Reflects actual data due to analysis beyond fiscal year-end close.

Sequencing Progress for Individual Organisms

See Sequencing Plans and Progress.