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… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … advances in management, processing and visualization of “big data,” and artificial Intelligent/machine learning … data science.  Research in the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. The …

… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses several … processes. This research provides insights into microbial diversity and metabolic potential, with implications for …

… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the … of high performance plants and microbes, and understanding microbiome interactions. The  insights derived are crucial …

… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, … as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating … metabolomic insights in lignin biosynthetic pathway edited populus …

… Plants are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … and are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, … fungi, viruses. Resident viruses can be found in a myriad of bacterial strains, whereby they can modulate host …

… group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … involves both experimental and computational exploration of uncultivated viral diversity, characterization of molecular mechanisms involved … is still limited. One key challenge is to complement diversity surveys ( Who is there? ) with activity …

… The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them translate … data usage by the applicant/community, and track record of the applicant.  Learn about the general review process or … timely manner will delay processing, while samples that are of insufficient quality or quantity will preclude approval …

… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct … Our aim is to more fully capture microbial and viral diversity, leading to a better understanding of microbial … of microbial ecology and metabolism by elucidating the functional potential of hard-to-culture microorganisms. This …

… well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. This … the JGI’s focus on expanding molecular capabilities and functional genomics, scaling capacity through end-to-end … An assay used for profiling transcription factor binding sites across entire …

… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … you to get a bird’s-eye perspective on the biosynthetic diversity element of these genomes. And you see how they’re– … of a plant, so the bacteria living on and inside the roots are protecting the plants against pathogens. So …

…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national … at Lawrence Berkeley National Laboratory. The JGI consists of 225 researchers and support staff in the Integrative … as the DOE Systems Biology Knowledgebase and the National Microbiome Data Collective.    …

… Uncovering associations between plant roots and fungi that can help or harm plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … They play key roles in maintaining the plant’s health and diversity, which can in turn boost yields for both food and …