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How to Submit Sequencing Samples
… and PacBio sequencing workflows and provide guidance as to how to perform sample QC prior to shipment: Importance of … Weight DNA extraction and quality control (from PacBio) 2) Review guidelines detailing quantity and quality … must also include a completed Export Certification Form . 2) Obtain Approval for Shipping Before approval to ship is …
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How To Use Our Systems
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Workforce Development & Education Outreach
… working directly with specific universities, continuing education programs in the Bay Area, and established programs … internship partnership that started in the summer of 2014. … program, a similar collaboration with AAMU was launched in 2024.  … understanding of research methodologies within the realm of education. …
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Metagenome Program
… and many other applications. By understanding how microbes contribute to ecosystem functions, the Program … potential. This research enables us to better understand how microbial communities contribute to critical processes … Prospective users with questions on how to partner with the Metagenome Science Program on their …
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Partnerships: Myco-Ed
… The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based … ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ students 800+ … through the links below. Naturalist Myco Ed Fungal Genomics Education Project MycoCosm MycoEd group page Protocols, …
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Secondary Metabolites Program
… defense, nutrient acquisition and communication. Studying how these compounds are biosynthesized and their roles in … aiding in symbiotic relationships and nutrient acquisition. However, secondary metabolite production is often not fully … Development of cell-free based expression platforms: Only 10-20% of BGCs are expressed under standard laboratory …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… of this is based on a really great paper that came out in 2020 where this is all explained in detail, so if you’d like a link, just check out the show notes above or at naturalprodcast.com. I should also … some of the great science that he does. So welcome to the show Paco Barona-Gomez from the Laboratorio Nacional de …
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Natural Prodcast Episode 9: Roger Linington
… fun conversation with Roger about all this, in terms of how to build an international community collaboration, and … it relates to structure elucidation and genome mining, and how we might start to better connect those two things, … Yeah, that’s right. We were postdocs together in the mid 2000s, I guess. You were working for Brad Moore. I was …
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Natural Prodcast Episode 22: Alison Narayan
… is also twofold but for different reasons to learn about how nature builds molecules because nature does this with … ask questions about what don’t we know about this molecule. How do we discover more about what it can do, and as … has to do with the mechanism. And so these enzymes use O2, and one of those oxygen atoms gets incorporated into our …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… sequences. As always, you’ll find transcripts and show notes with links to lots of other resources, especially … do genome mining. We’ve got a great, fun bunch of little shows lined up, and I’m really looking forward to getting … found in Yu et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did you …
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Natural Prodcast Episode 16: Marcy Balunas
… DAN: Hey Marcy!  ALISON: Hey Marcy?  MARCY: Hello. How’s it going?  DAN: Good. How are you?  MARCY: Am fine. I live in a pandemic so I’m no … say a clutch is probably the size of a golf ball and has 25 to 50 eggs. I’m guessing here.  DAN: Sure, sure.  MARCY: … Some of the work we discussed about bobtail squid, and how their symbionts inhibit other bacteria using secondary …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… Back in 2011, JGI-supported researchers published a paper in the journal Science . It detailed how they’d used metagenomics to identify over 27,000 … California State University campuses for biotechnology education as part of a course-based undergraduate resource …
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