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How to Submit Sequencing Samples
… 1) Review JGI sample QC requirements and protocols Obtaining … and PacBio sequencing workflows and provide guidance as to how to perform sample QC prior to shipment: Importance of … Protocol JGI’s Small RNA Sample QC Protocol DNA Extraction 101 : tips, kits, and protocols (from PacBio) Guidance for …
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How To Use Our Systems
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Workforce Development & Education Outreach
… working directly with specific universities, continuing education programs in the Bay Area, and established programs … internship partnership that started in the summer of 2014. … understanding of research methodologies within the realm of education. …
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Metagenome Program
… and many other applications. By understanding how microbes contribute to ecosystem functions, the Program … potential. This research enables us to better understand how microbial communities contribute to critical processes … Prospective users with questions on how to partner with the Metagenome Science Program on their …
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Partnerships: Myco-Ed
… The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based … Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ … through the links below. Naturalist Myco Ed Fungal Genomics Education Project MycoCosm MycoEd group page Protocols, …
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Secondary Metabolites Program
… defense, nutrient acquisition and communication. Studying how these compounds are biosynthesized and their roles in … aiding in symbiotic relationships and nutrient acquisition. However, secondary metabolite production is often not fully … Development of cell-free based expression platforms: Only 10-20% of BGCs are expressed under standard laboratory …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… metabolism. Hey everybody, this is Dan with episode 13 of National Prodcast. This continues our little section … in detail, so if you’d like a link, just check out the show notes above or at naturalprodcast.com. I should also … some of the great science that he does. So welcome to the show Paco Barona-Gomez from the Laboratorio Nacional de …
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Natural Prodcast Episode 9: Roger Linington
… fun conversation with Roger about all this, in terms of how to build an international community collaboration, and … it relates to structure elucidation and genome mining, and how we might start to better connect those two things, … about the topic we cared about. And that gave us about 12,000 molecules. And that was enough for us to build a …
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Natural Prodcast Episode 22: Alison Narayan
… is also twofold but for different reasons to learn about how nature builds molecules because nature does this with … ask questions about what don’t we know about this molecule. How do we discover more about what it can do, and as … I always use it as the first word in the title of my talk, 100% fair for you to make that association. DAN UDWARY: So I …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… sequences. As always, you’ll find transcripts and show notes with links to lots of other resources, especially … do genome mining. We’ve got a great, fun bunch of little shows lined up, and I’m really looking forward to getting them out to you all. But for now, here is episode 10 of Natural Prodcast, the primer on genome mining. Hey, …
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Natural Prodcast Episode 16: Marcy Balunas
… DAN: Hey Marcy!  ALISON: Hey Marcy?  MARCY: Hello. How’s it going?  DAN: Good. How are you?  MARCY: Am fine. I live in a pandemic so I’m no … so there are– I hesitate to make a guess but maybe 50 to 100 different strains and they are in individual tubules.  … Some of the work we discussed about bobtail squid, and how their symbionts inhibit other bacteria using secondary …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… Back in 2011, JGI-supported researchers published a paper in the journal Science . It detailed how they’d used metagenomics to identify over 27,000 … California State University campuses for biotechnology education as part of a course-based undergraduate resource …
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