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Data Policy
… Data produced and released by the US Department of Energy … Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and information sharing. We also recognize the need to … Embargo : A period in which data is not publicly available in JGI systems or outside …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users through a BER data ecosystem.  A data ecosystem is a connected resource … for scientific exploration, granting access to diverse datasets that deepen our understanding of how organisms interact …
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Microbiome Data Science Team
… technologies.  The exponential growth of DNA sequencing data, coupled with recent computational technology advances … in management, processing and visualization of “big data,” and artificial Intelligent/machine learning … approaches in data analysis and interpretation is creating new opportunities for breakthrough discoveries and …
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Analyze Data
… The JGI supports the entire data life cycle — from experimental design to reuse. Armed with the high-quality data we generate, tools like artificial intelligence … JGI is involved in efforts to integrate data in support of new research questions that span domains. We also work with …
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Data Policy & Support
… Read more about our data management practices and the resources we provide. … Read our research integrity and data code of conduct. … Data Management at the JGI …
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New Lineages of Life Group
… eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, … and phylogenomics) and machine learning to identify new divergent lineages and expand the Tree of Life. We then … of microbes on Earth. This ongoing census helps reveal new lineages and functional capabilities in the microbial …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… analogy to the California gold rush. And we’ll talk about a new JGI paper that’s just come out where I got the chance to … now, just because of the ways that we can generate data. So, obviously, it’s very apparent to us here at the … known things that were out there and created some good rule sets and put it all together in one package so that it …
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Natural Prodcast Episode 9: Roger Linington
… or NPAtlas, a freely accessible natural products structure database, which is going to be just invaluable to the … that most entries were looked at more at once, and so the quality – the data quality – was reasonably high. And yeah, … there is a high degree of overlap between those two data sets, which we have not yet recognized. So. DAN:  It’s one …
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Industry Engagement Program
… ensure U.S. energy dominance by integrating supercomputers, datasets and AI agents to solve key national challenges. The … generator, the JGI has a key role to play in providing high-quality, structured and curated data to support AI … LanzaTech, information that LanzaTech could use to develop new products with their production strains. To improve the …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… SMC – which is the new Secondary Metabolism Collaboratory data portal I’ve been working on with my colleagues Drew … I understand. And they’ve taken all of the really good high-quality genomes and run antiSMASH on those and put them into … databases, which will generate as soon as we have the new sets of data completely populated. And that database will …
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CSP New Investigator Call
… The CSP New Investigator Call is for investigators and research initiatives new to the JGI. Projects must be independent of ongoing JGI … FICUS proposal.   Competitive projects will provide pilot data to assess feasibility of a novel approach or form the … for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and track record of …
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Natural Prodcast Episode 18: A CSP Primer
… for you or thousands metagenomes. And I think also the quality that we provide. So for fungal and for a lot of our … algal genomes, a lot of effort goes into generating these data sets. There’s a lot of manual work in terms of the annotate, … Links: The main page for information about CSPs JGI’s Data Release Policy A statement on DOE Mission relevance If …
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