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Comparative analysis of GT14/GT14-like gene family in Arabidopsis, Oryza, Populus, Sorghum and Vitis
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Isolation of Histone from Sorghum Leaf Tissue for Top Down Mass Spectrometry Profiling of Potential Epigenetic Markers.
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… and viruses vastly outnumber the microbes. Advances in sequencing technologies and computational tools have … in collecting and submitting their microbiome samples for sequencing at the JGI cannot be overstated. Their … to defend against RNA,” Roux noted, “although it’s unclear why this is so rarely detected.” Developing Approaches for …
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Microbial Community Field Surveys Reveal Abundant Pseudomonas Population in Sorghum Rhizosphere Composed of Many Closely Related Phylotypes
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Secondary Metabolites Program
… We have developed Regulon Identification by in vitro-sequencing (RIViT-seq) to identify RNA polymerase-sigma … We are also utilizing DNA-Affinity Purification (DAP) sequencing to express hundreds of transcription factors and …
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A sorghum genome-wide association study (GWAS) identifies a WRKY transcription factor as a candidate gene underlying sugarcane aphid (Melanaphis sacchari) resistance
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Environmental Genomics Group
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… samples in from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with names — …
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A Collaboration to Improve Plant Genome Annotations Across Species
… comparative transcriptomics. *The HudsonAlpha Genome Sequencing Center works with scientists at the JGI a lot. In … Schmutz is the Plant Program Lead at the JGI. Sarah:  Why is a resource like this important to the field of plant … included datasets from two species, one of which is sweet sorghum Rio from a JGI Community Science Program project and …
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John Vogel
… et. al.N. 2019 Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and … al. 2014 Genome Diversity in Brachypodium distachyon : Deep Sequencing of Highly Diverse Inbred Lines 2014 Plant Journal … 79: 361–374 DOI: 10.1111/tpj.12569 Hsia, et. al. 2017 Sequencing and functional validation of the JGI Brachypodium …
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Bioenergy sorghum stem density increases threefold following internode elongation due to continued accumulation of lignified cell walls and complex regulation of genes involved in cell wall biosynthesis
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JGI-USCCN Strain Sequencing Opportunity
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