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JGI Scientists Pen Genome Watch Articles
… Tanja Woyke and other JGI researchers made their debut writing … hot topics in genomics.” And it makes sense to Woyke why JGI would have this role. “We work with leaders in … the column, Woyke wrote about the research field’s move toward characterizing the human microbiome  by its genomes and …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data … had any feature updates. Phytozome  v13, which now hosts upwards of 250 plant genomes and has been under active … Questions about the transition from Phytozome v12 to v13. Why is it necessary to retire Phytozome v12? The codebase …
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive … Do you accept oomycetes to be proposed for genome sequencing, or only “true fungi”? A(nswer): Our focus is on … you’re already working on this, or your intent to move forward and do manual, or experimental curation, or other …
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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According to the  International … to climate change and devastating fungal infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his … at the University of California, San Diego. As the Sequencing Technology Implementation Lead, he directs a … and plants. His team is also developing single-nuclei sequencing methods to characterize gene regulation at the …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… With a new methodology, scientists are now getting more complete … usually employ two different methods; shotgun metagenomic sequencing and single-cell sequencing. For years, extracting single cells and then … U.S. Department of Energy Joint Genome Institute (https:// …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… Researchers looked across many organisms to see that aminotransferase enzymes have … to the way many organisms function, they have a sense of why nitrogen metabolisms can be so varied.  As evolution has … different Swiss Army knives — explaining a bit more about why and how nitrogen metabolism is so robust and varied.  …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… Innovative technology from this biomanufacturing collaboration is available for licensing. The … This work was supported by laboratory-directed research and development (LDRD). The work conducted by the U.S. Department of … Genome-Encoded Bio(Nano)Materials … New Process Uses Microbes to Create Valuable Materials from …
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Short sequence motifs, overrepresented in mammalian conserved non-coding sequences
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Mindfully Moving JGI
… JGI is in the process of shifting its operations from Walnut Creek … Berkeley Lab campus. By Friday, October 18, the production sequencing labs in Building 100 were silent. Twenty years … at the IGB. “Sustainable Berkeley Lab is really gearing towards getting us to zero waste certification. That says …
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Introduction: Sequences and consequences
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Targeted single‐cell sequencing
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