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FICUS-NERSC/KBASE
… call do not use the Letter of Intent; rather proposals are submitted in a single step. … All proposals undergo technical review by JGI staff as well as staff at the other participating facilities. … etc.   During scientific peer review, proposals are evaluated and placed in rank order by the reviewers. The …
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A More Intuitive Phytozome Interface
… and only, version of Phytozome accessible as an interactive website. Since May 2019, v12 has not had any additional … browsers, gene pages, search, BLAST and BioMart data warehouse interfaces they have come to rely on from … Phytozome v13 has been accessible to users since 2019.  We have attempted to make sure users will continue to have …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… example, crop and ornamental seeds sold for the upper Midwest are often very different than those bred for Texas. … Texas with a shovel,” recalled study co-author David Lowry, who started as a postdoctoral fellow in the Juenger lab and …
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How Filamentous Fungi Sense Food
… of sustainable biofuels and bioproducts. Filamentous fungi are also being used in the biotechnology industry to produce … chemicals. Summary Filamentous fungi are like handymen who show up at a job site for a task that requires a … leads the JGI’s Sequencing Technologies group. DAP-seq allowed the team to identify the direct binding sites of many …
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Four Researchers Join JGI User Executive Committee
… of California, Davis, and Michael Köpke of Lanzatech are the latest additions to the now 14-member committee. Go … Bik is an associate professor at the University of Georgia whose work is at the interface between biology and computer science. Bik and her research …
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DNA Synthesis Program
… in synthetic biology by synthesizing genes, pathways, and whole chromosomes for bioenergy and bioproduct applications. … missions. Using bioinformatics tools and genome portals, we study lignocellulose decomposition, CO2 fixation, redox … partnership with the Joint BioEnergy Institute (JBEI), we are developing tools including ICE and DIVA to rapidly …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… researchers to go beyond understanding which microbes are present in a sample, to generate data about which … eating what,  in the environment.  This distinction — between presence and participation — is especially important in … communities harbor tens of thousands of different organisms who all consume different compounds. Microbial species will …
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JGI announces 2025 Functional Genomics awardees
… functional genomics research from scientists who translate genomic information into biological function. Through our  CSP Functional Genomics call , we look for projects that will leverage the JGI's DNA … a list of the 11 researchers accepted for 2025.  Proposals are accepted year-round ; the next deadline is Jan. 29, …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… students and their JGI mentors toasted to the end of a nine-week virtual internship. The celebration was preceded by short … due to the COVID-19 pandemic. As a result, mentors set up weekly, or in some cases daily, check-ins with their mentors …
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New Research Sheds Light on Diversity in the Deep Sea
… potential for bioenergy.   The Science Hydrothermal vents are ocean-floor openings in the Earth’s crust that emit hot, … in the types of microorganisms that inhabit these sites, as well as the way in which those microorganisms break down … of genes involved in sulfur and nitrogen metabolism, as well as those that play a role in carbon cycling. However, …
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JGI announces first round of 2023 New Investigator awardees
… The JGI is eager to work and share our tools with a widening circle of researchers. The JGI … widening circle of researchers. That’s why twice each year we look for novel research projects — aligned with DOE missions and from PIs who have not led any previously-accepted proposals —  …
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Picking Up Threads of Cotton Genomics
… bursting out of the green pods in every direction. There are 100 million families around the world whose livelihoods depend on cotton production, and the … Schmutz, who heads JGI’s Plant Program. He and Grimwood were also part of the JGI team that contributed to the …
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