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… v12 was first deployed (as the foundation for Phytozome v10) back in 2014.  Several components of that codebase are … grab genomes based on which version of Phytozome (e.g., 9, 10, 11, 12) they were first released in.  Are any genomes …

… analysis, creation of large metabolite databases by running 1000s of metabolite standards, and development of … untargeted analysis pipelines.  Beyond profiling over 10k samples/year, Dr. Louie and her team work with other JGI … natural products. Proc Natl Acad Sci U S A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards J, Louie KB, …

… Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth … of the arbuscular mycorrhizal symbiosis. Nature Plants 10, 673–688 Vyshenska et al. 2023. A standardized … BONCAT-FACS.  Nature Comm 10(1) 1-10 Schulz, F. et al. 2018. Hidden diversity of soil giant viruses. Nature Comm . 9 …

… ranging from wetlands to tree islands to cattails. In 2018, the US Department of Energy (DOE) Joint Genome Institute … real-time, video-conferenced seminars with the class. The 18 students organized and conducted a field trip, armed with … to write a final paper that  could be published. Watching 18 students working to create a paper simultaneously in the …

… combined with nearly 5,000 publicly available ones and 1,100 metagenome-assembled genomes (MAGs) reconstructed from …

… students and eight graduate students, hosted by 18 JGI staff. One of the mentors, postdoc Yumary Vasquez, …