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Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T)
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… As part of the JGI’s 25th anniversary celebration, the 2022 Annual Meeting … mural that local Bay Area artist Nigel Sussman recently finished at the Integrative Genomics Building, the JGI’s … one second. “It isn’t just the generation of vast troves of data, it’s the new areas of scientific possibility that …
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Partners
… The JGI leverages its existing partnerships and develops others … Energy Research Scientific Computing Center (NERSC) and data infrastructure projects—the DOE Systems Biology Knowledgebase (KBase) and the National Microbiome Data Collaborative (NMDC)—to provide access to datasets, …
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Offerings & Capabilities
… The central mission of the JGI’s Genomic Technologies department is   ensuring users … capabilities to help advance their science by generating data in three overarching categories: DNA Sequencing , DNA … phenotypic, metabolomic, imaging, sensor, and other data produced at scales amenable to statistical analysis. To …
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Events
…  Learn about meetings the JGI is hosting:   … The JGI is represented at conferences year round; find out where …
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Mindfully Moving JGI
… JGI is in the process of shifting its operations from Walnut … labs in Building 100 were silent. Twenty years after the JGI united the genomics expertise of three national labs in … and then installed at the  Integrative Genomics Building , JGI’s newly-built home located in the heart of the Berkeley …
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Natural Prodcast Episode 6: Marc Chevrette
… describe. [ Go here to learn more about Tiny Earth and the JGI’s role in the project by watching Amanda Hurley’s … for a company. Personally, that was my first taste of big data if you want, maybe it’s medium data now. But at the time, it was big data. And yeah, trying …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number … large-scale “citizen science” project to generate real-time data for modeling and predicting the spread of a plant … 500 people participated in SOD Blitz activity, and these data were subsequently used by three million others in the …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… From August 21-23, 2023, attendees joined the JGI Annual Genomics of Energy & Environment Meeting.  A wide … infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and new technology developments – has … said. Given the vast unknowns contained in metagenomic data sets, Holmes and his group set out to use protein …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… 1, 2020, that all changed. Ray’s vigilant stewardship as JGI’s Operations Deputy has come to a close as this … 1, 2020, that all changed. Ray’s vigilant stewardship as JGI’s Operations Deputy has come to a close as this … Lab. On June 24, in what was billed as a typical monthly JGI All-Hands Meeting, after a couple of perfunctory items, …
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An Integrated Dataset to Understand Ecosystem Interaction
… Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between … how ecosystems work and how healthy they are, a recent data set  outlined in  Scientific Data connects molecular … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… mSystems paper , a team at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Neighbor (KNN) Classification. LDA is a supervised data compression technique that was used to take the complex, high-dimensional data (the 136 tetranucleotide frequencies for each of the …
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