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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after … into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement Lead with a … JGI workloads. Dr. Fagnan was appointed CIO of the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… the microbes in and on humans shape our health. A total of 16 projects have been approved, divided among the following … impacts. The work is supported by NIH Common Fund grant 1U01DE034196-01. The JGI team, including Kyrpides, Camargo, and …
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Viral Genomics Group
… from metagenomes. mSystems 9:e00888-24. https://doi.org/10.1128/msystems.00888-24 Coclet, C., Sorensen, P.O., Karaoz, U. …
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FICUS
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Single Cell Research Group
… Anomaly” first described by Stanley and Konopa in 1985, which highlights our skewed understanding of microbial … and sequencing of rumen microbiome members from the Hungate1000 Collection.” Nat Biotechnol 36(4): 359-367 (2018). Woyke T ., Doud D. F. R., Schulz F. The trajectory of …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… resulted from a three-way collaboration that began in 2019, recalled Uri Neri of Tel Aviv University, one of the … also working on RNA virus mining. After a couple of virtual meetings of the three teams it was clear that a larger …
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Natural Prodcast Episode 22: Alison Narayan
… I always use it as the first word in the title of my talk, 100% fair for you to make that association. DAN UDWARY: So I … But then, imagine though– OK, my group– I brought in like a 10-pound thing of candy corn. I like put it in a candy dish … up and bring in fruit and things like that in between the 10 pounds bags of candy corn. JACKIE WINTER: Do you think we …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… Plant and Animal Genomes, or PAG conference, when in-person meetings were still a thing, i.e. in January. She talked … the leaf through which carbon dioxide enters the leaf for photosynthesis.  ALISON:  Photosynthesis is what allows plants to make their own food …
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Natural Prodcast Episode 6: Marc Chevrette
… project by watching Amanda Hurley’s presentation from the 2019 JGI Genomics of Energy & Environment Meeting.] He’s also … at over 270 places now worldwide with a rate of around 10,000 students a year. And that was those numbers were … an international ambassador? MARC: Yeah, I believe it was 2012 when she started this at Yale, and she only had six …
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Natural Prodcast Episode 16: Marcy Balunas
… so there are– I hesitate to make a guess but maybe 50 to 100 different strains and they are in individual tubules.  … in the field, these glacial bacteria grow slow and it’s not 100% clear that we know what their biological activities … call this the needle in the Haystack. Because if we have 10,000 features which one do we look at because we are a …
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Team Science Reveals Important Protein in Poplar
… (BNL) led a team that  identified a protein , PtrbHLH011, within poplar involved in plant growth, lignin … as nutrient-poor land, drought and disease.  Summary In the 1970s, the DOE  targeted poplar as its primary wood crop for … Laboratory (BNL). The Fe deprivation RNA-seq (proposal:  10.46936/10.25585/60001386 ) was conducted by the U.S. …
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Populus PtrbHLH011 Is a Transcriptional Co‐Regulator Involved in the Activation of Cell Wall Biosynthesis by Iron Deprivation
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